>SHH616 (SHH616Q) /CSM/SH/SHH6-A/SHH616Q.Seq.d/
TAATAATAGTAATGATAAAAATAGAAATAGTTGCAGCAGTAGTATTCTTGATTTAATAAG
ATCAAATCAAGAATTAAAACATAAAATCATTAATATTAATAATTATAATGAATTTCAATC
ATGGATCACAAATAATCAAAATAAAGATGATTGTAATAAAACATTAATAATATTTTTAAA
ATCAATTGAATCAACAATGAATACTTTTAATTTCAAAGAAATCACATTTGAATACATTCA
AATTAATCAATTAATATTAAAATTAGAATTATCAAATAATTTCAAACATTTATTATTATC
ATTAAATTCAAGCACTGATAATTATTTATCATCATCAATTATTGGTGCTGCTCGTTATTT
CGTTGAATTCCCACAATTAGATTTATATATTTTAAATTATGATAATGTTTCAATTGAAAA
TAATCAACAATTATCATTAATCAATTATTTAATCAATCCAAATAATAATATTCAAAAAGA
ATTTACAATTAATAATAATAAAGTATACTATGAAAGATATTGTAGAAGATCAAATAATAT
TAAAAGTATATTCCAATCTGAATCATTTGAAACCAATAAAGATAATTTATATATTCAATT
AAATTCAAATTTAGAATATCAATTATATAGTAAAAAAGCTGAATTAAATTCAAATGAAGT
XXXXXXXXXX

NNSNDKNRNSCSSSILDLIRSNQELKHKIININNYNEFQSWITNNQNKDDCNKTLIIFLK
SIESTMNTFNFKEITFEYIQINQLILKLELSNNFKHLLLSLNSSTDNYLSSSIIGAARYF
VEFPQLDLYILNYDNVSIENNQQLSLINYLINPNNNIQKEFTINNNKVYYERYCRRSNNI
KSIFQSESFETNKDNLYIQLNSNLEYQLYSKKAELNSNE---

Frame A:
******k*k*lqq*ys*fnkiksrikt*nh*y**l**isimdhk*sk*r*l**ninnifk
in*inneyf*fqrnhi*ihsn*sinikiriik*fqtfiiiikfkh**lfiiinywccslf
r*iptirfiyfkl**cfn*k*stiiinqlfnqsk**yskriyn****sil*kil*kik*y
*kyipi*ii*nq*r*fiysikfkfrisii**ks*ikfk*---


Frame B:
NNSNDKNRNSCSSSILDLIRSNQELKHKIININNYNEFQSWITNNQNKDDCNKTLIIFLK
SIESTMNTFNFKEITFEYIQINQLILKLELSNNFKHLLLSLNSSTDNYLSSSIIGAARYF
VEFPQLDLYILNYDNVSIENNQQLSLINYLINPNNNIQKEFTINNNKVYYERYCRRSNNI
KSIFQSESFETNKDNLYIQLNSNLEYQLYSKKAELNSNE---


Frame C:
iivmikieivaavvfli**dqikn*niksliliiimnfnhgsqiikikmivikh**yf*n
qlnqq*illiskkshlntfklin*y*n*nyqiisniyyyh*iqaliiiyhhqllvllvis
lnshn*iyif*imimfqlkiinnyh*sii*siqiiifkknlqliiikytmkdivedqiil
kvysnlnhlkpikiiyifn*iqi*ninyivkkln*iqmk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH616 (SHH616Q) /CSM/SH/SHH6-A/SHH616Q.Seq.d/                        825   0.0
VFM707 (VFM707Q) /CSM/VF/VFM7-A/VFM707Q.Seq.d/                         44   0.003
VFL253 (VFL253Q) /CSM/VF/VFL2-C/VFL253Q.Seq.d/                         44   0.003
SSE779 (SSE779Q) /CSM/SS/SSE7-D/SSE779Q.Seq.d/                         42   0.011
CHO726 (CHO726Q) /CSM/CH/CHO7-B/CHO726Q.Seq.d/                         42   0.011
CHM572 (CHM572Q) /CSM/CH/CHM5-C/CHM572Q.Seq.d/                         42   0.011
CHI335 (CHI335Q) /CSM/CH/CHI3-B/CHI335Q.Seq.d/                         42   0.011
AHQ521 (AHQ521Q) /CSM/AH/AHQ5-A/AHQ521Q.Seq.d/                         42   0.011
AHI508 (AHI508Q) /CSM/AH/AHI5-A/AHI508Q.Seq.d/                         42   0.011
AHI247 (AHI247Q) /CSM/AH/AHI2-B/AHI247Q.Seq.d/                         42   0.011

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   1e-10  12
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    40   2e-09  16
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   1e-08  14
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42   1e-08  12
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   3e-08  16
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   3e-08  15
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   4e-08  13
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome.    38   5e-08  18
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence.    34   7e-08  8
CR940347|CR940347.1 Theileria annulata genomic DNA chromosome 1 part 1.    38   9e-08  20

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...   128   1e-28
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...   125   1e-27
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...   118   2e-25
AC116982_72(AC116982|pid:none) Dictyostelium discoideum chromoso...   117   3e-25
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...   109   8e-23
AC116963_16(AC116963|pid:none) Dictyostelium discoideum chromoso...   104   3e-21
AC116963_19(AC116963|pid:none) Dictyostelium discoideum chromoso...   100   3e-20
AC116305_81(AC116305|pid:none) Dictyostelium discoideum chromoso...    89   1e-16
AC116305_75(AC116305|pid:none) Dictyostelium discoideum chromoso...    89   1e-16
AC116921_14(AC116921|pid:none) Dictyostelium discoideum chromoso...    53   7e-06

 psg: 0.81  gvh: 0.41  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SHH616 is cyt

>SHH616F.Seq
TAATAATAGTAATGATAAAAATAGAAATAGTTGCAGCAGTAGTATTCTTGATTTAATAAG
ATCAAATCAAGAATTAAAACATAAAATCATTAATATTAATAATTATAATGAATTTCAATC
ATGGATCACAAATAATCAAAATAAAGATGATTGTAATAAAACATTAATAATATTTTTAAA
ATCAATTGAATCAACAATGAATACTTTTAATTTCAAAGAAATCACATTTGAATACATTCA
AATTAATCAATTAATATTAAAATTAGAATTATCAAATAATTTCAAACATTTATTATTATC
ATTAAATTCAAGCACTGATAATTATTTATCATCATCAATTATTGGTGCTGCTCGTTATTT
CGTTGAATTCCCACAATTAGATTTATATATTTTAAATTATGATAATGTTTCAATTGAAAA
TAATCAACAATTATCATTAATCAATTATTTAATCAATCCAAATAATAATATTCAAAAAGA
ATTTACAATTAATAATAATAAAGTATACTATGAAAGATATTGTAGAAGATCAAATAATAT
TAAAAGTATATTCCAATCTGAATCATTTGAAACCAATAAAGATAATTTATATATTCAATT
AAATTCAAATTTAGAATATCAATTATATAGTAAAAAAGCTGAATTAAATTCAAATGAAGT
NNNNNNNNNN