AFJ515
Library AF
(Link to library)
Clone ID AFJ515
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02851-1
Original site URL
Representative seq. ID AFJ515F
(Link to Original site)
Representative DNA sequence
>AFJ515 (AFJ515Q) /CSM/AF/AFJ5-A/AFJ515Q.Seq.d/
AAAAATAAATTTTTTAATATAAAAAAGTATAATTGTAAATTATTATTATTATTATTTTTC
AATTATTTAAATATTTCTATAATATATTTTTTTTTTTTAANGCCACATAAAATTTATAAA
ANGAATCTTTTTNGGAATATAGCCCCAGNCCATAAAGANGATCCTGTTTTTATNCAGAAA
TNGTTATNCAGNCGAGATTATTATAATCTTTTNGTXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
KNKFFNIKKYNCKLLLLLFFNYLNISIIYFFFLXPHKIYKXNLFXNIAPXHKXDPVFXQK
XLXXRDYYNLX---


Translated Amino Acid sequence (All Frames)
Frame A:
KNKFFNIKKYNCKLLLLLFFNYLNISIIYFFFLXPHKIYKXNLFXNIAPXHKXDPVFXQK
XLXXRDYYNLX---


Frame B:
kinfli*ksiivnyyyyyfsii*ifl*yifff*xhikfikxifxgi*pqxikxilflxrn
xyxxeiiiifx---


Frame C:
k*if*ykkv*l*iiiiiifqlfkyfyniffffxat*nl*xesfxeyspxp*rxscfyxex
vxqxrll*sf---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFJ515 (AFJ515Q) /CSM/AF/AFJ5-A/AFJ515Q.Seq.d/ 178 2e-44
VFK879 (VFK879Q) /CSM/VF/VFK8-D/VFK879Q.Seq.d/ 36 0.21
CHK354 (CHK354Q) /CSM/CH/CHK3-C/CHK354Q.Seq.d/ 36 0.21
VSJ489 (VSJ489Q) /CSM/VS/VSJ4-D/VSJ489Q.Seq.d/ 34 0.83
VSJ140 (VSJ140Q) /CSM/VS/VSJ1-B/VSJ140Q.Seq.d/ 34 0.83
VSG213 (VSG213Q) /CSM/VS/VSG2-A/VSG213Q.Seq.d/ 34 0.83
VSG121 (VSG121Q) /CSM/VS/VSG1-A/VSG121Q.Seq.d/ 34 0.83
VSF378 (VSF378Q) /CSM/VS/VSF3-D/VSF378Q.Seq.d/ 34 0.83
VSD843 (VSD843Q) /CSM/VS/VSD8-B/VSD843Q.Seq.d/ 34 0.83
VSB355 (VSB355Q) /CSM/VS/VSB3-C/VSB355Q.Seq.d/ 34 0.83

own update 2002. 9.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP005676|AP005676.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1005_D12, WORKING DRAFT SEQUENCE, 1 ordered pieces. 36 1.6 3
AC009571|AC009571.3 Homo sapiens chromosome 4 clone RP11-57A22 map 4, WORKING DRAFT SEQUENCE, 9 unordered pieces. 38 2.2 2
AC096258|AC096258.7 Rattus norvegicus clone CH230-90G13, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 42 2.8 1
AC106401|AC106401.4 Rattus norvegicus clone CH230-131L3, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 2.8 1
AJ276209|AJ276209.1 Clostridium sticklandii ORF1 (partial), grdX gene, trxB gene, trxA gene, grdE gene, grdA gene, grdB gene, grdC gene, grdD gene, bmpA gene, rbsA gene, rbsC-1 gene and rbcC-2 gene (partial). 42 2.8 1
BH746968|BH746968.1 SALK_006746.29.99.f Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_006746.29.99.f, DNA sequence. 32 2.8 2
AC123496|AC123496.3 Rattus norvegicus clone CH230-104G16, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 3.0 2
BX558686|BX558686.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse3b04_p1c. 30 5.9 2
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome. 32 6.1 3
AX323565|AX323565.1 Sequence 53 from Patent WO0192565. 32 8.5 2
dna update 2003. 9. 5
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 144,154,397
protein update 2009. 4.23
PSORT

psg: 0.74 gvh: 0.54 alm: 0.29 top: 0.30 tms: 0.07 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.36 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: mitochondrial
16.0 %: nuclear
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for AFJ515 is end

5' end seq. ID AFJ515F
5' end seq.
>AFJ515F.Seq
AAAAATAAATTTTTTAATATAAAAAAGTATAATTGTAAATTATTATTATTATTATTTTTC
AATTATTTAAATATTTCTATAATATATTTTTTTTTTTTAANGCCACATAAAATTTATAAA
ANGAATCTTTTTNGGAATATAGCCCCAGNCCATAAAGANGATCCTGTTTTTATNCAGAAA
TNGTTATNCAGNCGAGATTATTATAATCTTTTNGT----------
Length of 5' end seq. 215
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -