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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH556
Library SH
(Link to library)
Clone ID SHH556
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHH556 (SHH556Q) /CSM/SH/SHH5-C/SHH556Q.Seq.d/
CTGATGATAACAATGCCTGTACAATTGATTCTTGTTCACCATCAACCGGTATTTCCCACA
CCCCAATCAATTGTGATGATAAAAAGGCCTGTACAGTTGATTCATGTTCAAATTCAACTG
GTTGTGTAAATACTCCAATTTCCTGTGACGATAATAATCCATGTACTGTTGATTCTTGCG
ATGACTTAACTGGTTGTTGCAATACTCCAATCAATGTTGATGATAATAATCCATGTACCA
TCGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATA
ACAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATA
CTGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCAACTGGTGTTTCCCATA
CCCCAATAAACTGTGATGATAATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTG
GTTGTGTAAATACTCCAATTAACNTGTGACGATAGTAATCCATGTACCGTAGACTCATGC
AATAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACC
GTCGATGCCTGTACCAAATCAACCAGGGGTTACTCATACCCCCANTCAATGTAGATGATN
ACAACAAATGTACAATTGATGCATGTACCAAAAAAAGGGGNNGTACTNATACCCCAATCC
AATACTGATGATAACAATGCCTGTACCAATGGATGCATNTTCCAAANAAAGGNGGNGTTA
ACTCATACNCCAATTAATTNCTGGATGAAAACNAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
DDNNACTIDSCSPSTGISHTPINCDDKKACTVDSCSNSTGCVNTPISCDDNNPCTVDSCD
DLTGCCNTPINVDDNNPCTIDACTKSTGVTHTPVNVDDNNKCTIDTCTKEGGVTHTPVNT
DDNNACTLDSCSPSTGVSHTPINCDDNNKCTVDSCSNSTGCVNTPINX*r**smyrrlmq
*fnwlckhssqc****smyrrclyqinqgllippxnvddxnkctidactkkrgxtxtpiq
y***qclyqwmhxpxkggvnsyxn*xlden---
Translated Amino Acid sequence (All Frames) 
Frame A:
lmitmpvqlilvhhqpvfptpqsivmikrpvqlihvqiqlvv*ilqfpvtiiihvllila
mt*lvvailqsmlmiiihvpsmpvlnqqvllipqsm*miitnvqlihvpkkvv*lilqsi
lmitmpvplipahhqlvfpipq*tvmiiinvl*ihvqtqlvv*ilqltcddsnpctvdsc
nnstgcvntpvnvddnnpctvdactkstrgysypxsm*mxttnvqlmhvpkkgxvlipqs
ntddnnactngcxfqxkxxlthtpinxwmkt---


Frame B:
***qclyn*flftinryfphpnql***kglys*fmfkfnwlckysnfl*r**smyc*flr
*lnwllqysnqc****smyhrcly*inrcysypsqcr***qmyn*ymyqrrwcnsyssqy
***qclyp*flltinwcfpypnkl*****mycrfmfklnwlckysn*xvtivihvp*tha
iiqlvv*tlqsmlmiiihvpsmpvpnqpgvthtpxqcr*xqqmyn*cmyqkkgxyxypnp
ilmitmpvpmdaxskxrxx*lixqlixg*k---


Frame C:
DDNNACTIDSCSPSTGISHTPINCDDKKACTVDSCSNSTGCVNTPISCDDNNPCTVDSCD
DLTGCCNTPINVDDNNPCTIDACTKSTGVTHTPVNVDDNNKCTIDTCTKEGGVTHTPVNT
DDNNACTLDSCSPSTGVSHTPINCDDNNKCTVDSCSNSTGCVNTPINX*r**smyrrlmq
*fnwlckhssqc****smyrrclyqinqgllippxnvddxnkctidactkkrgxtxtpiq
y***qclyqwmhxpxkggvnsyxn*xlden---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH556 (SHH556Q) /CSM/SH/SHH5-C/SHH556Q.Seq.d/                       1467   0.0
SHA221 (SHA221Q) /CSM/SH/SHA2-A/SHA221Q.Seq.d/                       1302   0.0
SHD894 (SHD894Q) /CSM/SH/SHD8-D/SHD894Q.Seq.d/                       1292   0.0
SHE633 (SHE633Q) /CSM/SH/SHE6-B/SHE633Q.Seq.d/                       1275   0.0
SHC394 (SHC394Q) /CSM/SH/SHC3-D/SHC394Q.Seq.d/                       1273   0.0
SHK455 (SHK455Q) /CSM/SH/SHK4-C/SHK455Q.Seq.d/                       1053   0.0
CHR684 (CHR684Q) /CSM/CH/CHR6-D/CHR684Q.Seq.d/                       1047   0.0
SHK502 (SHK502Q) /CSM/SH/SHK5-A/SHK502Q.Seq.d/                       1043   0.0
SHF321 (SHF321Q) /CSM/SH/SHF3-A/SHF321Q.Seq.d/                       1013   0.0
SHA313 (SHA313Q) /CSM/SH/SHA3-A/SHA313Q.Seq.d/                        979   0.0
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               88   7e-29  5
CK991559|CK991559.1 EST0111 Eyestalk cDNA library Penaeus monodon cDNA clone ES-N-S03-555-W 5' similar to Histidine-rich glycoprotein precursor (Plasmodium lophurae), mRNA sequence.    30   2e-04  5
BX231032|BX231032.1 Danio rerio genomic clone DKEY-254O18, genomic survey sequence.    30   0.007  5
AC174130|AC174130.2 Strongylocentrotus purpuratus clone R3-1024N7, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    38   0.041  3
DY699659|DY699659.1 EST_ssal_rgb2_55398 ssalrgb2 mixed_tissue Salmo salar cDNA Salmo salar cDNA clone ssal_rgb2_589_196_fwd 3', mRNA sequence.    36   0.71   2
Y08924|Y08924.1 P.falciparum mRNA for AARP2 protein.               30   0.85   5
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    46   1.3    1
BU494788|BU494788.1 PfESToab67g03.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    36   1.7    3
DE034582|DE034582.1 Branchiostoma floridae DNA, clone: CH302-053I19.F, genomic survey sequence.    34   1.8    2
BU497188|BU497188.1 PfESToab56a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9SSI6 Q9SSI6 PUTATIVE CELL DIVISION RELATED PROTEIN. ;, mRNA sequence.    34   2.1    3
dna update 2006. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   301   2e-80
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   300   5e-80
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   300   5e-80
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   251   6e-70
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   234   3e-60
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   225   1e-57
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                126   9e-28
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                122   1e-26
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                110   4e-23
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 98   1e-20
protein update 2009. 4.20
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SHH556 is cyt
5' end seq. ID SHH556F
5' end seq. 
>SHH556F.Seq
CTGATGATAACAATGCCTGTACAATTGATTCTTGTTCACCATCAACCGGTATTTCCCACA
CCCCAATCAATTGTGATGATAAAAAGGCCTGTACAGTTGATTCATGTTCAAATTCAACTG
GTTGTGTAAATACTCCAATTTCCTGTGACGATAATAATCCATGTACTGTTGATTCTTGCG
ATGACTTAACTGGTTGTTGCAATACTCCAATCAATGTTGATGATAATAATCCATGTACCA
TCGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATA
ACAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAATA
CTGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCAACTGGTGTTTCCCATA
CCCCAATAAACTGTGATGATAATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTG
GTTGTGTAAATACTCCAATTAACNTGTGACGATAGTAATCCATGTACCGTAGACTCATGC
AATAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACC
GTCGATGCCTGTACCAAATCAACCAGGGGTTACTCATACCCCCANTCAATGTAGATGATN
ACAACAAATGTACAATTGATGCATGTACCAAAAAAAGGGGNNGTACTNATACCCCAATCC
AATACTGATGATAACAATGCCTGTACCAATGGATGCATNTTCCAAANAAAGGNGGNGTTA
ACTCATACNCCAATTAATTNCTGGATGAAAACNANNNNNNNNNN
Length of 5' end seq. 824
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -