SHH508
Library SH
(Link to library)
Clone ID SHH508
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11136-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHH508 (SHH508Q) /CSM/SH/SHH5-A/SHH508Q.Seq.d/
CTAAACAAATGGAATTGAAATTGGCTCAATTGGTTCATTCATTGAAATCTGGTGATCAAC
AATTGACCGTTCAAGTTTTAAAAGGTGTCATTGAAGATATAAAGAAACAAGGTTTAGTAG
CTGAATTGGCTTCAAATTCAATCAAAGACTCTGATGAACATCGTGCAAATCGTATTAAAG
AGAGAGCTGTCGATTTAACAAATACCGGTCCAAATTTGGTTAAATCAGTTAAAGCAAATC
TAATTGAAATGAATTCTGATAATTTATCAGCATTGGTTCAAAATATTGGTCAAATTCGTG
AAACAAATAAAGATTTAAATAATGCTGTTTTCATGAGTACCGAAGAGGAACTCTTGGAAA
ATTCAGCAAAGATTGATCAAGAGATGAGAAGAATTCAAACCGCTTTAGCCAATGGTAAAC
CAATTACAGAACAAGAGATAAACTCATTAATGAAGAAAATGAATAACCAAATTCGTTTGG
CTCATCAACATGCTAAATCAATGAAAGATCCAAATTCAAAGAAAATCCTATTGGATACAA
CTGATAATTTAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
KQMELKLAQLVHSLKSGDQQLTVQVLKGVIEDIKKQGLVAELASNSIKDSDEHRANRIKE
RAVDLTNTGPNLVKSVKANLIEMNSDNLSALVQNIGQIRETNKDLNNAVFMSTEEELLEN
SAKIDQEMRRIQTALANGKPITEQEINSLMKKMNNQIRLAHQHAKSMKDPNSKKILLDTT
DNL---


Translated Amino Acid sequence (All Frames)
Frame A:
lnkwn*nwlnwfih*nlvinn*pfkf*kvslki*rnkv**lnwlqiqsktlmnivqivlk
relsi*qipvqiwlnqlkqi*lk*iliiyqhwfkilvkfvkqiki*imlfs*vpkrnswk
iqqrlikr*eefkpl*pmvnqlqnkr*th**rk*itkfvwlinmlnq*kiqiqrksywiq
lii*---


Frame B:
*tngieigsigsfieiw*stidrssfkrch*ryketrfss*igfkfnqrl**tscksy*r
escrfnkyrskfg*is*sksn*nef**fisigskywsns*nk*rfk*ccfheyrrgtlgk
fskd*srdeknsnrfsqw*tnyrtrdklineene*pnsfgsstc*inerskfkenpigyn
**f---


Frame C:
KQMELKLAQLVHSLKSGDQQLTVQVLKGVIEDIKKQGLVAELASNSIKDSDEHRANRIKE
RAVDLTNTGPNLVKSVKANLIEMNSDNLSALVQNIGQIRETNKDLNNAVFMSTEEELLEN
SAKIDQEMRRIQTALANGKPITEQEINSLMKKMNNQIRLAHQHAKSMKDPNSKKILLDTT
DNL---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHH508 (SHH508Q) /CSM/SH/SHH5-A/SHH508Q.Seq.d/ 1096 0.0
SHA584 (SHA584Q) /CSM/SH/SHA5-D/SHA584Q.Seq.d/ 1096 0.0
AHA883 (AHA883Q) /CSM/AH/AHA8-D/AHA883Q.Seq.d/ 1096 0.0
SHE470 (SHE470Q) /CSM/SH/SHE4-C/SHE470Q.Seq.d/ 1078 0.0
SHB381 (SHB381Q) /CSM/SH/SHB3-D/SHB381Q.Seq.d/ 1005 0.0
AHA629 (AHA629Q) /CSM/AH/AHA6-B/AHA629Q.Seq.d/ 809 0.0
AHC147 (AHC147Q) /CSM/AH/AHC1-B/AHC147Q.Seq.d/ 795 0.0
CHN118 (CHN118Q) /CSM/CH/CHN1-A/CHN118Q.Seq.d/ 597 e-170
AHQ409 (AHQ409Q) /CSM/AH/AHQ4-A/AHQ409Q.Seq.d/ 525 e-148
VHK742 (VHK742Q) /CSM/VH/VHK7-B/VHK742Q.Seq.d/ 470 e-131

own update 2002.12. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CT027788|CT027788.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 46 0.87 1
CT027798|CT027798.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-152M8. 46 0.87 1
BD143149|BD143149.1 Oxidoreductase gene, cloning of the gene, and process for producing the enzyme. 46 0.87 1
CP000254|CP000254.1 Methanospirillum hungatei JF-1, complete genome. 46 0.87 1
AE016879|AE016879.1 Bacillus anthracis str. Ames, complete genome. 46 0.87 1
AE017355|AE017355.1 Bacillus thuringiensis serovar konkukian str. 97-27, complete genome. 46 0.87 1
AE017225|AE017225.1 Bacillus anthracis str. Sterne, complete genome. 46 0.87 1
AE017334|AE017334.2 Bacillus anthracis str. 'Ames Ancestor', complete genome. 46 0.87 1
CP000001|CP000001.1 Bacillus cereus E33L, complete genome. 46 0.87 1
AE017035|AE017035.1 Bacillus anthracis str. Ames section 12 of 18 of the complete genome. 46 0.87 1
dna update 2006. 4.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK139176_1(AK139176|pid:none) Mus musculus 7 days neonate cerebe... 45 0.001
CR382130_452(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 44 0.004
BC167944_1(BC167944|pid:none) Xenopus tropicalis cDNA clone IMAG... 43 0.006
(P58301) RecName: Full=DNA double-strand break repair rad50 ATPa... 40 0.031
CP000726_2850(CP000726|pid:none) Clostridium botulinum A str. AT... 40 0.040
AP009049_1025(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 40 0.052
A95861(A95861) hypothetical protein SMb20153 [imported] - Sinorh... 40 0.052
AC116957_105(AC116957|pid:none) Dictyostelium discoideum chromos... 40 0.052
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 39 0.068
CP000739_385(CP000739|pid:none) Sinorhizobium medicae WSM419 pla... 39 0.089
protein update 2009. 4.20
PSORT

psg: 0.82 gvh: 0.47 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SHH508 is cyt

5' end seq. ID SHH508F
5' end seq.
>SHH508F.Seq
CTAAACAAATGGAATTGAAATTGGCTCAATTGGTTCATTCATTGAAATCTGGTGATCAAC
AATTGACCGTTCAAGTTTTAAAAGGTGTCATTGAAGATATAAAGAAACAAGGTTTAGTAG
CTGAATTGGCTTCAAATTCAATCAAAGACTCTGATGAACATCGTGCAAATCGTATTAAAG
AGAGAGCTGTCGATTTAACAAATACCGGTCCAAATTTGGTTAAATCAGTTAAAGCAAATC
TAATTGAAATGAATTCTGATAATTTATCAGCATTGGTTCAAAATATTGGTCAAATTCGTG
AAACAAATAAAGATTTAAATAATGCTGTTTTCATGAGTACCGAAGAGGAACTCTTGGAAA
ATTCAGCAAAGATTGATCAAGAGATGAGAAGAATTCAAACCGCTTTAGCCAATGGTAAAC
CAATTACAGAACAAGAGATAAACTCATTAATGAAGAAAATGAATAACCAAATTCGTTTGG
CTCATCAACATGCTAAATCAATGAAAGATCCAAATTCAAAGAAAATCCTATTGGATACAA
CTGATAATTTAAANNNNNNNNNN
Length of 5' end seq. 563
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -