>SHH383 (SHH383Q) /CSM/SH/SHH3-D/SHH383Q.Seq.d/
XXXXXXXXXXAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCC
CTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAAT
GTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAG
AATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACAGAAT
CAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTC
ATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAG
ATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCA
TTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTTTGCAAAC
CAAAAGGT

---IDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPE
LTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLD
LHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTPVCKPKG

Frame A:
---IDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPE
LTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLD
LHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTPVCKPKG


Frame B:
---ltvvlhhhqfqlvelslqpllvyhklsvivvqlvknvy*smvmkfvlnqqplvvfqn
*llvvlvqqlaglqvitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv*iv*i
fivrdkvispvlwlkiqisflvnivvmvnhvvnshqfanqk


Frame C:
---*rlcytitsfnwwnypsnhywcits*v*llsnwskmfisqws*nly*tsnhwwysri
nywlcwynnwqgyrslhriryr*stfm**isl*krngmscc*wcsrmftiklqmfrlfrs
sl*etr*fhlfyg*kskfhf**t*llw*iml*ihtslqtkr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH383 (SHH383Q) /CSM/SH/SHH3-D/SHH383Q.Seq.d/                        948   0.0
SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/                        946   0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/                        946   0.0
SHK535 (SHK535Q) /CSM/SH/SHK5-B/SHK535Q.Seq.d/                        946   0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                        946   0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/                        946   0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/                        946   0.0
SHH294 (SHH294Q) /CSM/SH/SHH2-D/SHH294Q.Seq.d/                        946   0.0
SHG839 (SHG839Q) /CSM/SH/SHG8-B/SHG839Q.Seq.d/                        946   0.0
SHG748 (SHG748Q) /CSM/SH/SHG7-B/SHG748Q.Seq.d/                        946   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   0.65   3
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   0.75   1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   1.2    2
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.0    1
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.0    1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    44   3.0    1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.0    1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.0    1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence.    44   3.0    1
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence.    44   3.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                287   1e-76
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                175   4e-43
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    52   7e-06
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    43   0.003
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    43   0.003
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    42   0.007
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    42   0.009
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 39   0.061
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    37   0.18
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.18

 psg: 0.75  gvh: 0.42  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SHH383 is nuc

>SHH383Z.Seq
NNNNNNNNNNAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCC
CTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAAT
GTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAG
AATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCATTACACAGAAT
CAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTC
ATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAG
ATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCA
TTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCAGTTTGCAAAC
CAAAAGGT