>SHH353 (SHH353Q) /CSM/SH/SHH3-C/SHH353Q.Seq.d/
TTTAATACTTTTAATAGTGGCAGCAGTAGTGTCAATTGTATTGGGTTCAATTGATTATAC
ATCAGATCATCCAGAGACAGGATGGATTGATGGTGTTGCAATTTTAGTAGCAGTTATATT
GGTAGTTGGTATTACATCATTGAATGATTTCAAGAATCAAGCTAGATTTAGAGAATTAAG
TGACAAGAGTAACGATAAGGAAGTTAAAGGTATTCGTGGTGGTGAACAATGTCAAATATC
AATATTCGATGTCAAGGTTGGTGATATTATCTCATTGGACACTGGTGATACCATTTGTGC
CGATGGTGTTTTCATTGAAGGACATGCATTGAAATGTGATGAATCATCAATCACAGGTGA
GAGTGACCCAATCAAGAAGGGTCAACCACAAGACAATATGGACCCATTCTTAATCTCTGG
TTCAATGGTAATCGAAGGTTTTGGTACGATGTTAGTCACAGCCGTTGGTGTAAATTCATT
CAATGGTAAAACTATGATGGGTCTCAGAGTGGCCTCTGAAGACACACCACTCCAAATGAA
ATTATCCGTGTTGGCAAGTCGTATTGGTTATTTCGGTATGGGTGCTGCCATTCTCATGTT
GCTCATTGCAATTCCXXXXXXXXXX

LILLIVAAVVSIVLGSIDYTSDHPETGWIDGVAILVAVILVVGITSLNDFKNQARFRELS
DKSNDKEVKGIRGGEQCQISIFDVKVGDIISLDTGDTICADGVFIEGHALKCDESSITGE
SDPIKKGQPQDNMDPFLISGSMVIEGFGTMLVTAVGVNSFNGKTMMGLRVASEDTPLQMK
LSVLASRIGYFGMGAAILMLLIAI---

Frame A:
fntfnsgsssvncigfn*lyirssrdrmd*wccnfsssyigswyyiie*fqess*i*rik
*qe*r*gs*rysww*tmsninircqgw*yylighw*yhlcrwcfh*rtciem**iinhr*
e*pnqegsttrqygpilnlwfngnrrfwydvshsrwckfiqw*nydgsqsgl*rhttpne
iirvgksywlfrygcchshvahcn---


Frame B:
LILLIVAAVVSIVLGSIDYTSDHPETGWIDGVAILVAVILVVGITSLNDFKNQARFRELS
DKSNDKEVKGIRGGEQCQISIFDVKVGDIISLDTGDTICADGVFIEGHALKCDESSITGE
SDPIKKGQPQDNMDPFLISGSMVIEGFGTMLVTAVGVNSFNGKTMMGLRVASEDTPLQMK
LSVLASRIGYFGMGAAILMLLIAI---


Frame C:
*yf**wqq*cqlywvqliihqiiqrqdglmvlqf**qlyw*lvlhh*misrikldlen*v
trvtirklkvfvvvnnvkyqysmsrlvilshwtlvipfvpmvfslkdmh*nvmnhqsqvr
vtqsrrvnhktiwths*slvqw*skvlvrc*sqplv*ihsmvkl*wvsewplkthhsk*n
ypcwqvvlvisvwvlpfsccslqf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH353 (SHH353Q) /CSM/SH/SHH3-C/SHH353Q.Seq.d/                       1219   0.0
SHF533 (SHF533Q) /CSM/SH/SHF5-B/SHF533Q.Seq.d/                       1100   0.0
CHO511 (CHO511Q) /CSM/CH/CHO5-A/CHO511Q.Seq.d/                        971   0.0
AHP330 (AHP330Q) /CSM/AH/AHP3-B/AHP330Q.Seq.d/                        854   0.0
FC-IC1755 (FC-IC1755Q) /CSM/FC-IC/FC-IC1755Q.Seq.d/                   825   0.0
AHD663 (AHD663Q) /CSM/AH/AHD6-C/AHD663Q.Seq.d/                        726   0.0
SHE405 (SHE405Q) /CSM/SH/SHE4-A/SHE405Q.Seq.d/                        696   0.0
VHL214 (VHL214Q) /CSM/VH/VHL2-A/VHL214Q.Seq.d/                        692   0.0
SHJ655 (SHJ655Q) /CSM/SH/SHJ6-C/SHJ655Q.Seq.d/                        686   0.0
CHM263 (CHM263Q) /CSM/CH/CHM2-C/CHM263Q.Seq.d/                        682   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X89369|X89369.1 D.discoideum mRNA for PAT1 protein.              1156   0.0    1
X15380|X15380.1 Dictyostelium discoideum V4b gene.                 96   1e-15  1
AC119839|AC119839.8 Mus musculus chromosome 1, clone RP24-170N13, complete sequence.    46   0.97   1
AC174504|AC174504.2 Strongylocentrotus purpuratus clone R3-3068G22, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    44   3.8    1
AC180403|AC180403.1 Strongylocentrotus purpuratus clone R3-3111C02, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44   3.8    1
AC179613|AC179613.1 Strongylocentrotus purpuratus clone R3-1028K21, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44   3.8    1
AC176824|AC176824.1 Strongylocentrotus purpuratus clone R3-3111H23, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44   3.8    1
AC176065|AC176065.1 Strongylocentrotus purpuratus clone R3-1F17, WORKING DRAFT SEQUENCE, 22 unordered pieces.    44   3.8    1
AV868610|AV868610.1 Ciona intestinalis cDNA, clone:rcieg58a18, 3' end, single read.    44   3.8    1
AC130167|AC130167.4 Rattus norvegicus clone CH230-103P21, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44   3.8    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S57726(S57726) PAT1 protein - slime mold (Dictyostelium discoide...   302   4e-81
CU633865_19(CU633865|pid:none) Podospora anserina genomic DNA ch...   151   2e-35
AP007155_536(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   147   3e-34
AJ243516_1(AJ243516|pid:none) Neurospora crassa partial nca-3 ge...   145   9e-34
AM270165_71(AM270165|pid:none) Aspergillus niger contig An08c010...   142   6e-33
CU633895_239(CU633895|pid:none) Podospora anserina genomic DNA c...   142   1e-32
AP007151_689(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...   138   1e-31
AM920428_1336(AM920428|pid:none) Penicillium chrysogenum Wiscons...   137   2e-31
AJ243515_1(AJ243515|pid:none) Neurospora crassa partial nca-2 ge...   137   3e-31
AE017344_342(AE017344|pid:none) Cryptococcus neoformans var. neo...   135   9e-31

 psg: 0.97  gvh: 0.71  alm: 0.17  top: 0.23  tms: 0.20  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SHH353 is end

>SHH353F.Seq
TTTAATACTTTTAATAGTGGCAGCAGTAGTGTCAATTGTATTGGGTTCAATTGATTATAC
ATCAGATCATCCAGAGACAGGATGGATTGATGGTGTTGCAATTTTAGTAGCAGTTATATT
GGTAGTTGGTATTACATCATTGAATGATTTCAAGAATCAAGCTAGATTTAGAGAATTAAG
TGACAAGAGTAACGATAAGGAAGTTAAAGGTATTCGTGGTGGTGAACAATGTCAAATATC
AATATTCGATGTCAAGGTTGGTGATATTATCTCATTGGACACTGGTGATACCATTTGTGC
CGATGGTGTTTTCATTGAAGGACATGCATTGAAATGTGATGAATCATCAATCACAGGTGA
GAGTGACCCAATCAAGAAGGGTCAACCACAAGACAATATGGACCCATTCTTAATCTCTGG
TTCAATGGTAATCGAAGGTTTTGGTACGATGTTAGTCACAGCCGTTGGTGTAAATTCATT
CAATGGTAAAACTATGATGGGTCTCAGAGTGGCCTCTGAAGACACACCACTCCAAATGAA
ATTATCCGTGTTGGCAAGTCGTATTGGTTATTTCGGTATGGGTGCTGCCATTCTCATGTT
GCTCATTGCAATTCCNNNNNNNNNN