>SHH334 (SHH334Q) /CSM/SH/SHH3-B/SHH334Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XCAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGA
TGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGC
TAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACA
ATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGG
ACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTAT
CAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGC
TGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAA
TAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCA
AATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAA
ATTAAATCAAGAAAAAAATCAACAAATTATTAGAACAAGAACAAAATCAAAAATAAT

iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENE
EEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQE
NDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQ
QDKLNQEKNQQIIRTRTKSKI

Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---QDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENE
EEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQE
NDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQ
QDKLNQEKNQQIIRTRTKSKI

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---kmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmk
knnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkr
tmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknn
kin*ikkkinklleqeqnqk*

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---rch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*r
rtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstre
rcclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprtt
r*iksrkkstny*nknkiknn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        517   e-146
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        517   e-146
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        517   e-146
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        517   e-146
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        517   e-146
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        517   e-146
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        517   e-146
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        517   e-146
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        517   e-146
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        517   e-146

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   517   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.28   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.28   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.28   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.28   1
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.28   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.28   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.28   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.28   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   206   5e-52
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    37   0.58
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    36   0.98
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           36   1.3
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   6.4
AE014186_35(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    33   8.3
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   8.3
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   8.3
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   8.3

 psg: 0.46  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.30  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHH334 is cyt

>SHH334F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N

>SHH334Z.Seq
NNNNNNNNNNCAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGA
AGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACA
AGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGA
AGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACA
ACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACT
TAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGA
GAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATT
GGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATC
TCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACA
ACAAGATAAATTAAATCAAGAAAAAAATCAACAAATTATTAGAACAAGAACAAAATCAAA
AATAAT

>SHH334P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-CAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGA
TGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGC
TAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACA
ATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGG
ACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTAT
CAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGC
TGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAA
TAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCA
AATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAA
ATTAAATCAAGAAAAAAATCAACAAATTATTAGAACAAGAACAAAATCAAAAATAAT