SHH312
Library SH
(Link to library)
Clone ID SHH312
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12095-1
Original site URL
Representative seq. ID SHH312P
(Link to Original site)
Representative DNA sequence
>SHH312 (SHH312Q) /CSM/SH/SHH3-A/SHH312Q.Seq.d/
ATTACTTTGCGTACAAAAACCCACACTTAATTTATTTTTTTAATTTTTATATATTTTTTT
ATTTTTTTAATTATTTCTGTAATAACATCTATATCAATACTATTTATAATAATACTTAAT
AAAATAATAATATAAATAAAGAGGTAGAAGAAGAAGAAAATAATAATAAAATAAATAAAA
ATGGCACCACCTACTAAAAGTAAAGATAATTTATTATTATGGTGTCAAAAAGTTATAAAA
TCATATGATGGTGATGATAATGATGAAAATAAAGAATTTAAATTAAAAGAAATTAAAGAT
TTTTCAGAATCATGGAAAGATGGTAAAGGATTTTTAGCGATTGTTCATTATGTATTTCCA
AGTGAAGAATTTAATTTCAAAGAGAAATTAATTGAATTGAAAACACCATTTCAACGTACA
AAATTTGCATTCAACTATGCACAAGATAAAGGTATTTCAAAATTATTAGAAGAAGATCAA
TTTAAAGATGACAATGATGATAATCAATTAAATTCATTGGAATCTGAAAAATTATCAATT
GAAACTTATTTATCATGTTTTTATCATGATTATAATAAAAAATTAGAAAATGAAAAGATT
GAATTAAAXXXXXXXXXXGAAGCAATCTCATTGGATAGTGAAATCACCAATGTCGTAACA
GAGAAAATCATAGCTCAATCTGAAGCGGATTCACGTATTCGTGAGAATATTGAAAAACTT
GAAGAAAAGTATAAATCAGAGATTAAAGCTAGAGAAGAATCCAAATTACAATTGGAAACT
AAACAATTCTTGGCAAATCAAAAACTTCAAGATAGAATTGACCAACAGAAACAATTGGAA
CAACAAAGAATTGATCGTGATAAAGAGTTGAGATTATTGAATGAGAAATTGGAGCAATTG
GAAACCGACTCTGAAATCTCTGATACTCCACTACAAAAACTTCGTGAAGAAATTAGATCT
TTGAAAATTCAAGCTGAAAAAGATAAAGAAGAATGTGAAGATTCCCAAGAATTAGTACAA
CAGATGGAATCTGATATCAAAAGATTAGAATATGAAGTATTGGATGAATCAAGTGAAGCC
TCCTTACATCAAAGACAACTTGAAATACTTGAAAAGAAATTACGTGAGGCTGAAGATGAA
TTACACTCTCATAATTTACAATTACAACAACAACAAATAGAATT
sequence update 2002.10.25
Translated Amino Acid sequence
itlrtktht*fiflifiyffifliisvitsisilfiiilnkiii*ikr*kkkkiiik*IK
MAPPTKSKDNLLLWCQKVIKSYDGDDNDENKEFKLKEIKDFSESWKDGKGFLAIVHYVFP
SEEFNFKEKLIELKTPFQRTKFAFNYAQDKGISKLLEEDQFKDDNDDNQLNSLESEKLSI
ETYLSCFYHDYNKKLENEKIEL---

---EAISLDSEITNVVTEKIIAQSEADSRIRENIEKLEEKYKSEIKAREESKLQLETKQF
LANQKLQDRIDQQKQLEQQRIDRDKELRLLNEKLEQLETDSEISDTPLQKLREEIRSLKI
QAEKDKEECEDSQELVQQMESDIKRLEYEVLDESSEASLHQRQLEILEKKLREAEDELHS
HNLQLQQQQIE


Translated Amino Acid sequence (All Frames)
Frame A:
itlrtktht*fiflifiyffifliisvitsisilfiiilnkiii*ikr*kkkkiiik*IK
MAPPTKSKDNLLLWCQKVIKSYDGDDNDENKEFKLKEIKDFSESWKDGKGFLAIVHYVFP
SEEFNFKEKLIELKTPFQRTKFAFNYAQDKGISKLLEEDQFKDDNDDNQLNSLESEKLSI
ETYLSCFYHDYNKKLENEKIEL---

---EAISLDSEITNVVTEKIIAQSEADSRIRENIEKLEEKYKSEIKAREESKLQLETKQF
LANQKLQDRIDQQKQLEQQRIDRDKELRLLNEKLEQLETDSEISDTPLQKLREEIRSLKI
QAEKDKEECEDSQELVQQMESDIKRLEYEVLDESSEASLHQRQLEILEKKLREAEDELHS
HNLQLQQQQIE

Frame B:
llcvqkptlnlff*flyiflff*lfl**hlyqyyl**ylik**yk*rgrrrrk***nk*k
whhllkvkiiyyygvkkl*nhmmvmimmkiknln*kklkifqnhgkmvkdf*rlfimyfq
vknliskrn*ln*khhfnvqnlhstmhkikvfqny*kkinlkmtmmiin*ihwnlknyql
kliyhvfimiiikn*kmkrln*---

---kqshwivkspms*qrks*lnlkrihvfvrilknlkksinqrlkleknpnynwklnns
wqiknfkieltnrnnwnnkeliviks*dy*mrnwsnwkptlkslilhyknfvkkldl*kf
klkkikknvkipkn*ynrwnliskd*nmkywmnqvkppyikdnlkylkrnyvrlkmnytl
iiynynnnk*n

Frame C:
yfayknphliyffnfyiffyffnyfcnniyintiynnt**nnninkeveeeennnkinkn
gtty*k*r*fiimvsksykii*w*****k*ri*ikrn*rffrimerw*rifsdcslcisk
*ri*fqrein*ientistykiciqlctr*ryfkiirrrsi*r*q***sikfigi*kiin*
nlfimfls*l**kirk*kd*ik---

---snlig**nhqcrnrenhssi*sgftys*ey*kt*rkv*ird*s*rriqitign*til
gksktsr*n*ptetigttkn*s**rveiie*eigaignrl*nl*ysttkts*rn*ifens
s*kr*rrm*rfpristtdgi*yqkiri*sig*ik*slltsktt*nt*keit*g*r*itls
*ftittttnri

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHH312 (SHH312Q) /CSM/SH/SHH3-A/SHH312Q.Seq.d/ 1927 0.0
SHH340 (SHH340Q) /CSM/SH/SHH3-B/SHH340Q.Seq.d/ 1082 0.0
SHH338 (SHH338Q) /CSM/SH/SHH3-B/SHH338Q.Seq.d/ 1068 0.0
VSH240 (VSH240Q) /CSM/VS/VSH2-B/VSH240Q.Seq.d/ 844 0.0
VHP275 (VHP275Q) /CSM/VH/VHP2-D/VHP275Q.Seq.d/ 833 0.0
SLI306 (SLI306Q) /CSM/SL/SLI3-A/SLI306Q.Seq.d/ 817 0.0
SSJ191 (SSJ191Q) /CSM/SS/SSJ1-D/SSJ191Q.Seq.d/ 589 e-167
FC-BD07 (FC-BD07Q) /CSM/FC/FC-BD/FC-BD07Q.Seq.d/ 48 3e-04
CHQ264 (CHQ264Q) /CSM/CH/CHQ2-C/CHQ264Q.Seq.d/ 48 3e-04
CHI561 (CHI561Q) /CSM/CH/CHI5-C/CHI561Q.Seq.d/ 48 3e-04

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 5e-08 14
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 38 2e-07 10
AB102780|AB102780.1 Dictyostelium discoideum K4 mRNA for kinesin-related protein K4, complete cds. 36 2e-06 7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 4e-05 11
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 44 1e-04 14
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome. 38 6e-04 17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 8e-04 11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 40 0.001 10
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 46 0.002 13
BH327522|BH327522.1 CH230-174H21.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-174H21, DNA sequence. 44 0.002 2
dna update 2006. 4.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat... 71 8e-11
(Q9Y0T4) RecName: Full=Cortexillin-1; AltName: Full=Cortexillin ... 71 8e-11
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir... 69 3e-10
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co... 69 3e-10
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 67 9e-10
AC116957_105(AC116957|pid:none) Dictyostelium discoideum chromos... 66 3e-09
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik... 65 4e-09
L08068_1(L08068|pid:none) Physarum polycephalum actin-binding pr... 65 4e-09
AL844508_35(AL844508|pid:none) Plasmodium falciparum strain 3D7,... 65 4e-09
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes... 64 8e-09
protein update 2009. 4.19
PSORT

psg: 0.70 gvh: 0.37 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for SHH312 is cyt

5' end seq. ID SHH312F
5' end seq.
>SHH312F.Seq
ATTACTTTGCGTACAAAAACCCACACTTAATTTATTTTTTTAATTTTTATATATTTTTTT
ATTTTTTTAATTATTTCTGTAATAACATCTATATCAATACTATTTATAATAATACTTAAT
AAAATAATAATATAAATAAAGAGGTAGAAGAAGAAGAAAATAATAATAAAATAAATAAAA
ATGGCACCACCTACTAAAAGTAAAGATAATTTATTATTATGGTGTCAAAAAGTTATAAAA
TCATATGATGGTGATGATAATGATGAAAATAAAGAATTTAAATTAAAAGAAATTAAAGAT
TTTTCAGAATCATGGAAAGATGGTAAAGGATTTTTAGCGATTGTTCATTATGTATTTCCA
AGTGAAGAATTTAATTTCAAAGAGAAATTAATTGAATTGAAAACACCATTTCAACGTACA
AAATTTGCATTCAACTATGCACAAGATAAAGGTATTTCAAAATTATTAGAAGAAGATCAA
TTTAAAGATGACAATGATGATAATCAATTAAATTCATTGGAATCTGAAAAATTATCAATT
GAAACTTATTTATCATGTTTTTATCATGATTATAATAAAAAATTAGAAAATGAAAAGATT
GAATTAAANNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID SHH312Z
3' end seq.
>SHH312Z.Seq
NNNNNNNNNNGAAGCAATCTCATTGGATAGTGAAATCACCAATGTCGTAACAGAGAAAAT
CATAGCTCAATCTGAAGCGGATTCACGTATTCGTGAGAATATTGAAAAACTTGAAGAAAA
GTATAAATCAGAGATTAAAGCTAGAGAAGAATCCAAATTACAATTGGAAACTAAACAATT
CTTGGCAAATCAAAAACTTCAAGATAGAATTGACCAACAGAAACAATTGGAACAACAAAG
AATTGATCGTGATAAAGAGTTGAGATTATTGAATGAGAAATTGGAGCAATTGGAAACCGA
CTCTGAAATCTCTGATACTCCACTACAAAAACTTCGTGAAGAAATTAGATCTTTGAAAAT
TCAAGCTGAAAAAGATAAAGAAGAATGTGAAGATTCCCAAGAATTAGTACAACAGATGGA
ATCTGATATCAAAAGATTAGAATATGAAGTATTGGATGAATCAAGTGAAGCCTCCTTACA
TCAAAGACAACTTGAAATACTTGAAAAGAAATTACGTGAGGCTGAAGATGAATTACACTC
TCATAATTTACAATTACAACAACAACAAATAGAATT
Length of 3' end seq. 576
Connected seq. ID SHH312P
Connected seq.
>SHH312P.Seq
ATTACTTTGCGTACAAAAACCCACACTTAATTTATTTTTTTAATTTTTATATATTTTTTT
ATTTTTTTAATTATTTCTGTAATAACATCTATATCAATACTATTTATAATAATACTTAAT
AAAATAATAATATAAATAAAGAGGTAGAAGAAGAAGAAAATAATAATAAAATAAATAAAA
ATGGCACCACCTACTAAAAGTAAAGATAATTTATTATTATGGTGTCAAAAAGTTATAAAA
TCATATGATGGTGATGATAATGATGAAAATAAAGAATTTAAATTAAAAGAAATTAAAGAT
TTTTCAGAATCATGGAAAGATGGTAAAGGATTTTTAGCGATTGTTCATTATGTATTTCCA
AGTGAAGAATTTAATTTCAAAGAGAAATTAATTGAATTGAAAACACCATTTCAACGTACA
AAATTTGCATTCAACTATGCACAAGATAAAGGTATTTCAAAATTATTAGAAGAAGATCAA
TTTAAAGATGACAATGATGATAATCAATTAAATTCATTGGAATCTGAAAAATTATCAATT
GAAACTTATTTATCATGTTTTTATCATGATTATAATAAAAAATTAGAAAATGAAAAGATT
GAATTAAA----------GAAGCAATCTCATTGGATAGTGAAATCACCAATGTCGTAACA
GAGAAAATCATAGCTCAATCTGAAGCGGATTCACGTATTCGTGAGAATATTGAAAAACTT
GAAGAAAAGTATAAATCAGAGATTAAAGCTAGAGAAGAATCCAAATTACAATTGGAAACT
AAACAATTCTTGGCAAATCAAAAACTTCAAGATAGAATTGACCAACAGAAACAATTGGAA
CAACAAAGAATTGATCGTGATAAAGAGTTGAGATTATTGAATGAGAAATTGGAGCAATTG
GAAACCGACTCTGAAATCTCTGATACTCCACTACAAAAACTTCGTGAAGAAATTAGATCT
TTGAAAATTCAAGCTGAAAAAGATAAAGAAGAATGTGAAGATTCCCAAGAATTAGTACAA
CAGATGGAATCTGATATCAAAAGATTAGAATATGAAGTATTGGATGAATCAAGTGAAGCC
TCCTTACATCAAAGACAACTTGAAATACTTGAAAAGAAATTACGTGAGGCTGAAGATGAA
TTACACTCTCATAATTTACAATTACAACAACAACAAATAGAATT
Length of connected seq. 1174
Full length Seq ID -
Full length Seq. -
Length of full length seq. -