>SHH290 (SHH290Q) /CSM/SH/SHH2-D/SHH290Q.Seq.d/
XXXXXXXXXXCAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGA
AGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACA
AGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGA
AGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACA
ACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACT
TAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGA
GAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATT
GGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACANCAATC
TCCTGACCAAATTAAAAATCAATTAAAAAAATATTCAAACATGAACAAACAAAATCCAAG
TTNCANCNAAGATAAATTAAATCAAGAAAAAAATCAAC

---DAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEE
EQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQEN
DAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKXQSPDQIKNQLKKYSNMNKQNPSX
XXDKLNQEKNQ

Frame A:
---kmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmk
knnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkr
tmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnxnlltklkin*kniqt*tnkiqv
xxkin*ikkkin


Frame B:
---rch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*r
rtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstre
rcclle*c*ksst*igc*ig*k**tresr*efssretxis*pn*ksikkifkheqtkskx
xxr*iksrkks


Frame C:
---DAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEE
EQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQEN
DAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKXQSPDQIKNQLKKYSNMNKQNPSX
XXDKLNQEKNQ

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH290 (SHH290Q) /CSM/SH/SHH2-D/SHH290Q.Seq.d/                        490   e-137
CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        426   e-118
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        426   e-118
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        426   e-118
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        426   e-118
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        426   e-118
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        426   e-118
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        426   e-118
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        426   e-118
SLC269 (SLC269Q) /CSM/SL/SLC2-C/SLC269Q.Seq.d/                        426   e-118

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   426   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   103   4e-18  1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.22   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.22   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.22   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.22   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.22   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.22   1
AP008121|AP008121.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT12K04, TM1507.    36   0.88   3
DT461480|DT461480.1 GH_ON40P21.r GH_ON Gossypium hirsutum cDNA clone GH_ON40P21 3', mRNA sequence.    46   0.89   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   196   4e-49
(A3DE44) RecName: Full=Translation initiation factor IF-2;  &CP0...    39   0.13
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    38   0.17
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           38   0.22
FN317103_1(FN317103|pid:none) Schistosoma japonicum isolate Anhu...    36   0.63
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    36   0.63
CP001321_204(CP001321|pid:none) Haemophilus parasuis SH0165, com...    35   1.1
BX571856_712(BX571856|pid:none) Staphylococcus aureus subsp. aur...    35   1.4
AP009351_651(AP009351|pid:none) Staphylococcus aureus subsp. aur...    35   1.4
AJ938182_626(AJ938182|pid:none) Staphylococcus aureus RF122 comp...    35   1.4

 psg: 0.75  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHH290 is nuc

>SHH290Z.Seq
NNNNNNNNNNCAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGA
AGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACA
AGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGA
AGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACA
ACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACT
TAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGA
GAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATT
GGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACANCAATC
TCCTGACCAAATTAAAAATCAATTAAAAAAATATTCAAACATGAACAAACAAAATCCAAG
TTNCANCNAAGATAAATTAAATCAAGAAAAAAATCAAC