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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH284
Library SH
(Link to library)
Clone ID SHH284
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHH284P
(Link to Original site)
Representative DNA sequence 
>SHH284 (SHH284Q) /CSM/SH/SHH2-D/SHH284Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XTTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAG
TTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAAT
TAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAAC
TTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATG
TTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAAC
AAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAG
CTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGA
ATTTAGTTCAAGAGNANCAACAATCTCCTGACCAAATTAAAAAATCAAATTAAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---LQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNL
QQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDV
EKAQLELDAELAKNNKQENQDENLVQEXQQSPDQIKKSN*kn
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---ftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kf
ttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c
*ksst*igc*ig*k**tresr*efssrxxtis*pn*kiklkk

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---LQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNL
QQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDV
EKAQLELDAELAKNNKQENQDENLVQEXQQSPDQIKKSN*kn

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---ynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiy
nnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vml
kklnlnwmlnwlkiinkrikmri*fkxxnnlltklknqikki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        414   e-115
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        414   e-115
SSE796 (SSE796Q) /CSM/SS/SSE7-D/SSE796Q.Seq.d/                        414   e-115
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        414   e-115
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        414   e-115
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        414   e-115
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        414   e-115
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        414   e-115
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        414   e-115
SLC269 (SLC269Q) /CSM/SL/SLC2-C/SLC269Q.Seq.d/                        414   e-115
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   414   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.23   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.23   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.23   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.23   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.23   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.23   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.23   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.23   1
dna update 2006. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   157   2e-37
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   7.4
protein update 2008.11.18
PSORT 

 psg: 0.43  gvh: 0.08  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHH284 is nuc
5' end seq. ID SHH284F
5' end seq. 
>SHH284F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID SHH284Z
3' end seq. 
>SHH284Z.Seq
NNNNNNNNNNTTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCC
AACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAA
TGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATT
TACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAG
CAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGAC
AAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATG
TTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATC
AAGATGAGAATTTAGTTCAAGAGNANCAACAATCTCCTGACCAAATTAAAAAATCAAATT
AAAAAAATA
Length of 3' end seq. 489
Connected seq. ID SHH284P
Connected seq. 
>SHH284P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-TTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAG
TTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAAT
TAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAAC
TTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATG
TTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAAC
AAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAG
CTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGA
ATTTAGTTCAAGAGNANCAACAATCTCCTGACCAAATTAAAAAATCAAATTAAAAAAATA
Length of connected seq. 590
Full length Seq ID -
Full length Seq. -
Length of full length seq. -