SHH246
Library SH
(Link to library)
Clone ID SHH246
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHH246P
(Link to Original site)
Representative DNA sequence
>SHH246 (SHH246Q) /CSM/SH/SHH2-B/SHH246Q.Seq.d/
AAAAAAATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTAT
TTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATA
TATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTG
ATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTAC
AATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAAT
CTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTAT
TAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTT
TACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAG
TTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATG
CTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAGA
TTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTTAXXXXXXXX
XXCNATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATG
TTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATT
TCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAAC
AAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTG
ATGAAGTTAGAAAACATTTCCGTCCAGAGGTTTTTAAATCGTCTCGATGATATAATTGTC
TTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTC
GAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCA
ATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAA
AAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAA
GGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAACAA
CAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAATA
AAAAATAAATAAAATCTATNCTGTTTTTTTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
kn**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTD
KTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLL
AKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDA
GATKEQVIQAVKEIRGNKKITSKTAESTYEALSKYG---

---XYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYIL
GEQANKEGGNNSLSQACKDKVIDEVRKHFRPEVFKSSR*ynclysie*rkps*yyyssik
irrkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*keych*t**thpww*ikr
ksrcccq*krsssql*yyrfktttttssfsnqktkny*ikknkk*iksxlff*


Translated Amino Acid sequence (All Frames)
Frame A:
kkink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknll
ikqiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy
*pnnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywem
lvqpknklykqlkrleeikrlqvklqnlpmkhyqnmv---

---XYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYIL
GEQANKEGGNNSLSQACKDKVIDEVRKHFRPEVFKSSR*ynclysie*rkps*yyyssik
irrkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*keych*t**thpww*ikr
ksrcccq*krsssql*yyrfktttttssfsnqktkny*ikknkk*iksxlff*

Frame B:
kklinnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy*
*nkynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kii
sqttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrc
wcnqrtsytss*rd*rk*kdyk*ncriyl*siikiwl---

---xtv*yclmklkklinkfgmfsykywmkvvlpmvkvep*isqmllsl*pqi*vvntsl
vnkqtkkvvttlyhklvkikslmklenisvqrflnrlddiivftplskenlhsiitlqlr
svekrledqnmslkisndaldsiinaaydpifggrplkryieknivtelsklilggklke
nqgvvvnekdhhlnfdiidlkqqqqrpasptkkqktik*kkiknk*nlxcffk

Frame C:
kn**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTD
KTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLL
AKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDA
GATKEQVIQAVKEIRGNKKITSKTAESTYEALSKYG---

---iqcsiv**s*kssstslecsltsig*rssyrwsr*nrrflkccyhydlkfr*sihpw
*tskqrrw*qlfitsl*r*sh**s*ktfpsrgf*ivsmi*lsllh*vkktfivlllfn*d
pskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh*nvtlkrilslnlvnsslvvn*kk
ikvllsmkkiiistlil*i*nnnnnvqllqpknkkllnkkk*kinkiyxvflk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHH246 (SHH246Q) /CSM/SH/SHH2-B/SHH246Q.Seq.d/ 2183 0.0
VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/ 1219 0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/ 1219 0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/ 1219 0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/ 1219 0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/ 1219 0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/ 1219 0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/ 1219 0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/ 1219 0.0
SHL591 (SHL591Q) /CSM/SH/SHL5-D/SHL591Q.Seq.d/ 1219 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence. 70 1e-09 2
AE017143|AE017143.1 Haemophilus ducreyi strain 35000HP complete genome. 50 7e-06 2
AE017152|AE017152.1 Haemophilus ducreyi strain 35000HP section 2 of 6 of the complete genome. 50 8e-06 2
L42023|L42023.1 Haemophilus influenzae Rd KW20, complete genome. 44 1e-04 2
AR632719|AR632719.1 Sequence 1 from patent US 6846651. 44 1e-04 2
AR274513|AR274513.1 Sequence 1 from patent US 6506581. 44 1e-04 2
BD426631|BD426631.1 The Nucleotide Sequence of the Haemophilus influenzae Rd Genome,Fragments Thereof, and Uses Thereof. 44 1e-04 2
U32767|U32767.1 Haemophilus influenzae Rd section 82 of 163 of the complete genome. 44 1e-04 2
BD425742|BD425742.1 The Nucleotide Sequence of the Haemophilus influenzae Rd Genome,Fragments Thereof, and Uses Thereof. 44 1e-04 2
CP000082|CP000082.1 Psychrobacter arcticus 273-4, complete genome. 48 4e-04 2
dna update 2006. 4. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par... 112 1e-45
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par... 112 2e-45
(Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 112 2e-45
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote... 112 3e-45
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par... 110 5e-45
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ... 112 8e-45
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM... 112 8e-45
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote... 109 8e-45
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25... 104 8e-45
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei... 112 8e-45
protein update 2009. 4.19
PSORT

psg: 0.63 gvh: 0.36 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SHH246 is cyt

5' end seq. ID SHH246F
5' end seq.
>SHH246F.Seq
AAAAAAATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTAT
TTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATA
TATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTG
ATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTAC
AATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAAT
CTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTAT
TAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTT
TACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAG
TTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATG
CTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAGA
TTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTTANNNNNNNN
NN
Length of 5' end seq. 662
3' end seq. ID SHH246Z
3' end seq.
>SHH246Z.Seq
NNNNNNNNNNCNATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGT
TTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAAC
CGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCT
TGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAA
AGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGGTTTTTAAATCGTCTCGATGATA
TAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAA
GATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTT
TAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTT
ACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAG
AAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATT
TAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAA
AAAAAATAAAAAATAAATAAAATCTATNCTGTTTTTTTAAAA
Length of 3' end seq. 702
Connected seq. ID SHH246P
Connected seq.
>SHH246P.Seq
AAAAAAATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTAT
TTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATA
TATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTG
ATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTAC
AATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAAT
CTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTAT
TAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTT
TACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAG
TTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATG
CTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAGA
TTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTTA--------
--CNATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATG
TTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATT
TCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAAC
AAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTG
ATGAAGTTAGAAAACATTTCCGTCCAGAGGTTTTTAAATCGTCTCGATGATATAATTGTC
TTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTC
GAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCA
ATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAA
AAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAA
GGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAACAA
CAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAATA
AAAAATAAATAAAATCTATNCTGTTTTTTTAAAA
Length of connected seq. 1344
Full length Seq ID -
Full length Seq. -
Length of full length seq. -