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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH245
Library SH
(Link to library)
Clone ID SHH245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12092-1
Original site URL
Representative seq. ID SHH245P
(Link to Original site)
Representative DNA sequence 
>SHH245 (SHH245Q) /CSM/SH/SHH2-B/SHH245Q.Seq.d/
ATTTTTCCCCTTTCTTAGAAACATAATCCTTTTTATTTTATTTTATTTTTTTTTTTTTNA
GTTTTTNATTTTNATTTTTNATTTTNATTTTNGNTNTTTTTTTTNAATTTTNAGGAATTN
TTTTTTTTNCAAXXXXXXXXXXTGCAGAGTTATCATGGACACCTGGTGTTTTATTTCAAG
CAGAGGATAGAGCTCATCGTTATGGTCAAACCTCTTCGGTTTTAGTTCAATATTTAATAG
CATTAGGTACAGTGGATGAAATGATTTGGTCATTAGTGGAATCAAAGAAAACTCTATTGG
GCAGAGTTTTAGATGATGAAGACGGTCAATCTTTAAATGCTGAAGATGCTGGTCAATTAG
AACATGGTGAACAAAGTGTAGATGATTTCATAGATTCATTAATTAAAAAAGTAGAGGAAC
AAGATCAAATTAGAAAAAAAAATATGATGATAAACAAAGAAGAAAAGAAGAGAAATTATT
AAAACTTCAATTAAAGAATGGTAGTGGTGGTGGTGGTGGAGAAGAAGATGATAATAGCGA
TTTAGATAATTCTGATGACGATGAAGATGATGAATATGATAATGATGACGAAGATGGTAT
TGATGAAGATGATATTTCAGATGCAATTTATGATGGATCAAATTTTGAAGATGAAATGAT
GTCATCAAAAAATAAACCCAAAACCTCAAAGAAACCAGCTGCTTTAAAATCTTCAAAAGC
TGCTGCTTCTACTGTGCTCTTCAAAATCAACAACC
sequence update 2002.10.25
Translated Amino Acid sequence 
FFPFLRNIILFILFYFFFFXFXIXIFXFXFXXFFXIXRNXFFX---

---AELSWTPGVLFQAEDRAHRYGQTSSVLVQYLIALGTVDEMIWSLVESKKTLLGRVLD
DEDGQSLNAEDAGQLEHGEQSVDDFIDSLIKKVEEQDQIRKKNMMINKEEKKRNY*nfn*
rmvvvvvvekkmiiai*iilmtmkmmnmimmtkmvlmkmifqmqfmmdqilkmk*chqki
npkpqrnqll*nlqklllllcsskstt
Translated Amino Acid sequence (All Frames) 
Frame A:
ifpls*khnpfyfilffffxvfxfxfxfxfxxffxnfxexffxq---

---crvimdtwcfissrg*ssslwsnlfgfssifnsirysg*ndlvisgikensigqsfr
**rrsifkc*rcwsirtw*tkcr*fhrfin*ksrgtrsn*kkkyddkqrrkeekllklql
kngsgggggeeddnsdldnsdddeddeydnddedgideddisdaiydgsnfedemmsskn
kpktskkpaalksskaaastvlfkinn

Frame B:
FFPFLRNIILFILFYFFFFXFXIXIFXFXFXXFFXIXRNXFFX---

---AELSWTPGVLFQAEDRAHRYGQTSSVLVQYLIALGTVDEMIWSLVESKKTLLGRVLD
DEDGQSLNAEDAGQLEHGEQSVDDFIDSLIKKVEEQDQIRKKNMMINKEEKKRNY*nfn*
rmvvvvvvekkmiiai*iilmtmkmmnmimmtkmvlmkmifqmqfmmdqilkmk*chqki
npkpqrnqll*nlqklllllcsskstt

Frame C:
fspflet*sflfyfifffxsfxfxfxixixxxffxfxgixffx---

---qsyhghlvfyfkqrielivmvkplrf*fni**h*vqwmk*fgh*wnqrklywaef*m
mktvnl*mlkmlvn*nmvnkv*mis*ih*lkk*rnkiklekki***tkkkrreiiktsik
ew*wwwwwrrr***rfr*f**r*r**i****rrwy**r*yfrcnl*wikf*r*ndvikk*
tqnlketscfkifksccfycalqnqq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH245 (SHH245Q) /CSM/SH/SHH2-B/SHH245Q.Seq.d/                        759   0.0
SLG210 (SLG210Q) /CSM/SL/SLG2-A/SLG210Q.Seq.d/                         44   0.003
VHQ219 (VHQ219Q) /CSM/VH/VHQ2-A/VHQ219Q.Seq.d/                         42   0.012
VHP838 (VHP838Q) /CSM/VH/VHP8-B/VHP838Q.Seq.d/                         42   0.012
VHP378 (VHP378Q) /CSM/VH/VHP3-D/VHP378Q.Seq.d/                         42   0.012
VHO634 (VHO634Q) /CSM/VH/VHO6-B/VHO634Q.Seq.d/                         42   0.012
VHO522 (VHO522Q) /CSM/VH/VHO5-A/VHO522Q.Seq.d/                         42   0.012
VHN613 (VHN613Q) /CSM/VH/VHN6-A/VHN613Q.Seq.d/                         42   0.012
VHM560 (VHM560Q) /CSM/VH/VHM5-C/VHM560Q.Seq.d/                         42   0.012
VHK408 (VHK408Q) /CSM/VH/VHK4-A/VHK408Q.Seq.d/                         42   0.012
own update 2003. 6. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF079449|AF079449.1 Dictyostelium discoideum TBP-associated factor A (tafA) gene, partial cds.   577   0.0    4
AQ227023|AQ227023.1 HS_2013_A2_F08_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2013 Col=16 Row=K, genomic survey sequence.    56   0.001  1
AC098146|AC098146.6 Rattus norvegicus clone CH230-173L17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48   0.002  5
AC107436|AC107436.5 Rattus norvegicus clone CH230-78K24, WORKING DRAFT SEQUENCE, 1 ordered piece.    42   0.003  2
AC184179|AC184179.1 Strongylocentrotus purpuratus clone R3-6C4, WORKING DRAFT SEQUENCE, 26 unordered pieces.    38   0.012  2
AC178738|AC178738.1 Strongylocentrotus purpuratus clone R3-13L11, WORKING DRAFT SEQUENCE, 20 unordered pieces.    38   0.013  2
DV159077|DV159077.1 KG9B.005G02F.050721T7 KG9B Nicotiana tabacum cDNA clone KG9B.005G02, mRNA sequence.    52   0.019  1
AC091164|AC091164.1 Homo sapiens chromosome 8 clone RP11-266D22 map 8, WORKING DRAFT SEQUENCE, 6 unordered pieces.    52   0.019  1
AP003549|AP003549.1 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1554H10, WORKING DRAFT SEQUENCE, unordered pieces.    52   0.019  1
AC020776|AC020776.4 Homo sapiens clone RP11-30J11, WORKING DRAFT SEQUENCE, 8 unordered pieces.    52   0.019  1
dna update 2006. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954214_116(CR954214|pid:none) Ostreococcus tauri strain OTTH05...    81   4e-14
AM459930_9(AM459930|pid:none) Vitis vinifera contig VV78X090328....    79   2e-13
CP000600_105(CP000600|pid:none) Ostreococcus lucimarinus CCE9901...    74   5e-12
(Q0P4U8) RecName: Full=SWI/SNF-related matrix-associated actin-d...    72   2e-11
(Q498E7) RecName: Full=SWI/SNF-related matrix-associated actin-d...    72   2e-11
AK043129_1(AK043129|pid:none) Mus musculus 7 days neonate cerebe...    71   3e-11
(Q8MNV7) RecName: Full=Putative SMARCAL1-like protein;          ...    71   3e-11
AF088884_1(AF088884|pid:none) Mus musculus HepA-related protein ...    71   3e-11
U41534_10(U41534|pid:none) Caenorhabditis elegans cosmid C16A3, ...    71   3e-11
AF209773_1(AF209773|pid:none) Mus musculus HepA-related protein ...    71   3e-11
protein update 2009. 4.19
PSORT 

 psg: 1.00  gvh: 0.63  alm: 0.21  top: 0.40  tms: 0.07  mit: 0.39  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: cytoplasmic
	 16.0 %: endoplasmic reticulum
	 12.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SHH245 is mit
5' end seq. ID SHH245F
5' end seq. 
>SHH245F.Seq
ATTTTTCCCCTTTCTTAGAAACATAATCCTTTTTATTTTATTTTATTTTTTTTTTTTTNA
GTTTTTNATTTTNATTTTTNATTTTNATTTTNGNTNTTTTTTTTNAATTTTNAGGAATTN
TTTTTTTTNCAANNNNNNNNNN
Length of 5' end seq. 142
3' end seq. ID SHH245Z
3' end seq. 
>SHH245Z.Seq
NNNNNNNNNNTGCAGAGTTATCATGGACACCTGGTGTTTTATTTCAAGCAGAGGATAGAG
CTCATCGTTATGGTCAAACCTCTTCGGTTTTAGTTCAATATTTAATAGCATTAGGTACAG
TGGATGAAATGATTTGGTCATTAGTGGAATCAAAGAAAACTCTATTGGGCAGAGTTTTAG
ATGATGAAGACGGTCAATCTTTAAATGCTGAAGATGCTGGTCAATTAGAACATGGTGAAC
AAAGTGTAGATGATTTCATAGATTCATTAATTAAAAAAGTAGAGGAACAAGATCAAATTA
GAAAAAAAAATATGATGATAAACAAAGAAGAAAAGAAGAGAAATTATTAAAACTTCAATT
AAAGAATGGTAGTGGTGGTGGTGGTGGAGAAGAAGATGATAATAGCGATTTAGATAATTC
TGATGACGATGAAGATGATGAATATGATAATGATGACGAAGATGGTATTGATGAAGATGA
TATTTCAGATGCAATTTATGATGGATCAAATTTTGAAGATGAAATGATGTCATCAAAAAA
TAAACCCAAAACCTCAAAGAAACCAGCTGCTTTAAAATCTTCAAAAGCTGCTGCTTCTAC
TGTGCTCTTCAAAATCAACAACC
Length of 3' end seq. 623
Connected seq. ID SHH245P
Connected seq. 
>SHH245P.Seq
ATTTTTCCCCTTTCTTAGAAACATAATCCTTTTTATTTTATTTTATTTTTTTTTTTTTNA
GTTTTTNATTTTNATTTTTNATTTTNATTTTNGNTNTTTTTTTTNAATTTTNAGGAATTN
TTTTTTTTNCAA----------TGCAGAGTTATCATGGACACCTGGTGTTTTATTTCAAG
CAGAGGATAGAGCTCATCGTTATGGTCAAACCTCTTCGGTTTTAGTTCAATATTTAATAG
CATTAGGTACAGTGGATGAAATGATTTGGTCATTAGTGGAATCAAAGAAAACTCTATTGG
GCAGAGTTTTAGATGATGAAGACGGTCAATCTTTAAATGCTGAAGATGCTGGTCAATTAG
AACATGGTGAACAAAGTGTAGATGATTTCATAGATTCATTAATTAAAAAAGTAGAGGAAC
AAGATCAAATTAGAAAAAAAAATATGATGATAAACAAAGAAGAAAAGAAGAGAAATTATT
AAAACTTCAATTAAAGAATGGTAGTGGTGGTGGTGGTGGAGAAGAAGATGATAATAGCGA
TTTAGATAATTCTGATGACGATGAAGATGATGAATATGATAATGATGACGAAGATGGTAT
TGATGAAGATGATATTTCAGATGCAATTTATGATGGATCAAATTTTGAAGATGAAATGAT
GTCATCAAAAAATAAACCCAAAACCTCAAAGAAACCAGCTGCTTTAAAATCTTCAAAAGC
TGCTGCTTCTACTGTGCTCTTCAAAATCAACAACC
Length of connected seq. 745
Full length Seq ID -
Full length Seq. -
Length of full length seq. -