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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH236
Library SH
(Link to library)
Clone ID SHH236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHH236P
(Link to Original site)
Representative DNA sequence 
>SHH236 (SHH236Q) /CSM/SH/SHH2-B/SHH236Q.Seq.d/
ATTGATTATTTTCATTTATATAATTATTTCATTTTTATATAAATAAAAAAATGTCAACAC
AACAAGCATTAGCTCAGGCTAATGAACATGCTTTAAGCCAAGCAAATGATTTAATTAAAG
TTGGATCAAAATTAAGAGCATTAAGTGTCTTAAGAGATTTATTAAGTGATCGTAGTCAAT
GGCATTCAAGTTTAGAACAAATTATGTCATTATACGTTTCATTATGTGCTGAACAATTAG
ATTATCAATCATTAAGAGATGGTATTCATCATTTCAAAGTTTCAATCATGTCACAAAAGG
AATTCTCAATTGTACCATTAGAAAATATCTTTAAAGAAATCATTACACCAATTGAACAAA
AAGTAGACGAATTAAAAGAGAAAATTGAAAAAGAAAATCAAGAGAATCCATTAGTTGAAC
AAAATGAAATCTCACTCATTGATCCACAACAAACTCTCTTATTCTCTTATATGAAATATT
TATTTGAAGCTTATAAAGCAATGATTGAAGTACTCACTCGTCAAAATACTAAATTTGAAC
ATACTAAATTTGATCATTCTAAATTTGATTCAACTTTACTTAAAATTTCAACTCAAGCAT
TAAATTATTGTXXXXXXXXXXTCCCCCAAAAAAAAATGGAGGTGGTANTGGTGGTTTNGG
TGGTANACGTNATNATNCCCCCCCNAAACGNGNANAANGNGGTGATNGTTNGGGTAAANG
NGAAAATGTTNCCCCCCCAAAACGTNANGAANGTNGTNATNGTTNGGGTAAANGTNATNA
TGNTNCCCCAAAAAAAAACGGNGGTGGNGGTAGTGGTTTTGGTAAAAATCAAGGAGNCCA
AGGNGATNAAAACGANANNTGGANATNCGNTTACAAAAAANAANAAAACAAAAAANAT
sequence update 2002.10.25
Translated Amino Acid sequence 
*lfsfi*LFHFYINKKMSTQQALAQANEHALSQANDLIKVGSKLRALSVLRDLLSDRSQW
HSSLEQIMSLYVSLCAEQLDYQSLRDGIHHFKVSIMSQKEFSIVPLENIFKEIITPIEQK
VDELKEKIEKENQENPLVEQNEISLIDPQQTLLFSYMKYLFEAYKAMIEVLTRQNTKFEH
TKFDHSKFDSTLLKISTQALNYC---

---PPKKNGGGXGGXGGXRXXXPPKRXXXGDXXGKXENVXPPKRXEXXXXXGKXXXXXPK
KNGGGGSGFGKNQGXQGDXNXXWXXXYKKXXNKKX
Translated Amino Acid sequence (All Frames) 
Frame A:
idyfhlynyfifi*ikkcqhnkh*lrlmnml*akqmi*lkldqn*eh*vs*eiy*vivvn
giqv*nklchytfhyvlnn*iinh*emvfiiskfqschkrnsqlyh*kislkkslhqlnk
k*tn*krklkkkikrih*lnkmkshslihnklsysli*niylklikq*lkyslvkilnln
ilnliilnliqlylkfqlkh*ii---

---spkkkwrwxwwfxwxtxxxppxtxxxx*xxg*xxkcxppktxxxxxxxg*xxxxxpk
kkrxwx*wfw*ksrxprxxkrxxxxrlqkxxkqkx

Frame B:
liifiyiiisflyk*knvnttsissg**tcfkpsk*fn*swikiksikclkrfik*s*sm
afkfrtnyviirfimc*tirlsiikrwyssfqsfnhvtkgilnctirkyl*rnhytn*tk
srrikren*krksresis*tk*nlth*sttnslillyeifi*sl*snd*sthssky*i*t
y*i*sf*i*fnft*nfnssikll---

---PPKKNGGGXGGXGGXRXXXPPKRXXXGDXXGKXENVXPPKRXEXXXXXGKXXXXXPK
KNGGGGSGFGKNQGXQGDXNXXWXXXYKKXXNKKX

Frame C:
*lfsfi*LFHFYINKKMSTQQALAQANEHALSQANDLIKVGSKLRALSVLRDLLSDRSQW
HSSLEQIMSLYVSLCAEQLDYQSLRDGIHHFKVSIMSQKEFSIVPLENIFKEIITPIEQK
VDELKEKIEKENQENPLVEQNEISLIDPQQTLLFSYMKYLFEAYKAMIEVLTRQNTKFEH
TKFDHSKFDSTLLKISTQALNYC---

---pqkkmevvxvvxvvxvxxppxnxxxxvxvxvxxkmxppqnvxxvvxvxvxvxmxpqk
ktxvxvvvlvkikexkxxktxxgxxxtkxxktkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ486 (VHQ486Q) /CSM/VH/VHQ4-D/VHQ486Q.Seq.d/                        666   0.0
VHQ255 (VHQ255Q) /CSM/VH/VHQ2-C/VHQ255Q.Seq.d/                        666   0.0
VHP666 (VHP666Q) /CSM/VH/VHP6-C/VHP666Q.Seq.d/                        666   0.0
VHO756 (VHO756Q) /CSM/VH/VHO7-C/VHO756Q.Seq.d/                        666   0.0
VHM249 (VHM249Q) /CSM/VH/VHM2-C/VHM249Q.Seq.d/                        666   0.0
VHL330 (VHL330Q) /CSM/VH/VHL3-B/VHL330Q.Seq.d/                        666   0.0
VHK759 (VHK759Q) /CSM/VH/VHK7-C/VHK759Q.Seq.d/                        666   0.0
VHK547 (VHK547Q) /CSM/VH/VHK5-B/VHK547Q.Seq.d/                        666   0.0
VHH308 (VHH308Q) /CSM/VH/VHH3-A/VHH308Q.Seq.d/                        666   0.0
VHG452 (VHG452Q) /CSM/VH/VHG4-C/VHG452Q.Seq.d/                        666   0.0
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   496   0.0    7
AL035477|AL035477.6 Plasmodium falciparum MAL4P4.                  46   0.018  5
CW376326|CW376326.1 fsbb001f054c14f0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f054c14, genomic survey sequence.    52   0.023  1
CW143479|CW143479.1 104_535_11137435_148_34958_076 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11137435, genomic survey sequence.    52   0.023  1
U07703|U07703.1 Chironomus thummi 7B globin gene cluster.          38   0.031  4
AL426340|AL426340.1 clone BA0AB012C07 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    50   0.090  1
AX344202|AX344202.1 Sequence 49 from Patent WO0200926.             48   0.35   1
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           48   0.35   1
CZ940996|CZ940996.1 322933 Tomato EcoRI BAC Library Lycopersicon esculentum genomic clone SL_EcoRI0017L22 5, genomic survey sequence.    48   0.35   1
AE006268|AE006268.1 Lactococcus lactis subsp. lactis IL1403 section 30 of 218 of the complete genome.    36   0.85   2
dna update 2006. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9XHR2) RecName: Full=Eukaryotic translation initiation factor ...    52   3e-05
BC066670_1(BC066670|pid:none) Danio rerio eukaryotic translation...    52   3e-05
BC064926_1(BC064926|pid:none) Homo sapiens eukaryotic translatio...    51   6e-05
BC107776_1(BC107776|pid:none) Homo sapiens eukaryotic translatio...    51   6e-05
BC033769_1(BC033769|pid:none) Homo sapiens eukaryotic translatio...    51   6e-05
BC054342_1(BC054342|pid:none) Homo sapiens eukaryotic translatio...    51   6e-05
D50929_1(D50929|pid:none) Homo sapiens mRNA for KIAA0139 gene, p...    51   6e-05
AK172899_1(AK172899|pid:none) Mus musculus mRNA for mKIAA0139 pr...    50   7e-05
(P23116) RecName: Full=Eukaryotic translation initiation factor ...    50   7e-05
AK145132_1(AK145132|pid:none) Mus musculus mammary gland RCB-052...    50   7e-05
protein update 2009. 4.19
PSORT 

 psg: 0.79  gvh: 0.45  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SHH236 is nuc
5' end seq. ID SHH236F
5' end seq. 
>SHH236F.Seq
ATTGATTATTTTCATTTATATAATTATTTCATTTTTATATAAATAAAAAAATGTCAACAC
AACAAGCATTAGCTCAGGCTAATGAACATGCTTTAAGCCAAGCAAATGATTTAATTAAAG
TTGGATCAAAATTAAGAGCATTAAGTGTCTTAAGAGATTTATTAAGTGATCGTAGTCAAT
GGCATTCAAGTTTAGAACAAATTATGTCATTATACGTTTCATTATGTGCTGAACAATTAG
ATTATCAATCATTAAGAGATGGTATTCATCATTTCAAAGTTTCAATCATGTCACAAAAGG
AATTCTCAATTGTACCATTAGAAAATATCTTTAAAGAAATCATTACACCAATTGAACAAA
AAGTAGACGAATTAAAAGAGAAAATTGAAAAAGAAAATCAAGAGAATCCATTAGTTGAAC
AAAATGAAATCTCACTCATTGATCCACAACAAACTCTCTTATTCTCTTATATGAAATATT
TATTTGAAGCTTATAAAGCAATGATTGAAGTACTCACTCGTCAAAATACTAAATTTGAAC
ATACTAAATTTGATCATTCTAAATTTGATTCAACTTTACTTAAAATTTCAACTCAAGCAT
TAAATTATTGTNNNNNNNNNN
Length of 5' end seq. 621
3' end seq. ID SHH236Z
3' end seq. 
>SHH236Z.Seq
NNNNNNNNNNTCCCCCAAAAAAAAATGGAGGTGGTANTGGTGGTTTNGGTGGTANACGTN
ATNATNCCCCCCCNAAACGNGNANAANGNGGTGATNGTTNGGGTAAANGNGAAAATGTTN
CCCCCCCAAAACGTNANGAANGTNGTNATNGTTNGGGTAAANGTNATNATGNTNCCCCAA
AAAAAAACGGNGGTGGNGGTAGTGGTTTTGGTAAAAATCAAGGAGNCCAAGGNGATNAAA
ACGANANNTGGANATNCGNTTACAAAAAANAANAAAACAAAAAANAT
Length of 3' end seq. 287
Connected seq. ID SHH236P
Connected seq. 
>SHH236P.Seq
ATTGATTATTTTCATTTATATAATTATTTCATTTTTATATAAATAAAAAAATGTCAACAC
AACAAGCATTAGCTCAGGCTAATGAACATGCTTTAAGCCAAGCAAATGATTTAATTAAAG
TTGGATCAAAATTAAGAGCATTAAGTGTCTTAAGAGATTTATTAAGTGATCGTAGTCAAT
GGCATTCAAGTTTAGAACAAATTATGTCATTATACGTTTCATTATGTGCTGAACAATTAG
ATTATCAATCATTAAGAGATGGTATTCATCATTTCAAAGTTTCAATCATGTCACAAAAGG
AATTCTCAATTGTACCATTAGAAAATATCTTTAAAGAAATCATTACACCAATTGAACAAA
AAGTAGACGAATTAAAAGAGAAAATTGAAAAAGAAAATCAAGAGAATCCATTAGTTGAAC
AAAATGAAATCTCACTCATTGATCCACAACAAACTCTCTTATTCTCTTATATGAAATATT
TATTTGAAGCTTATAAAGCAATGATTGAAGTACTCACTCGTCAAAATACTAAATTTGAAC
ATACTAAATTTGATCATTCTAAATTTGATTCAACTTTACTTAAAATTTCAACTCAAGCAT
TAAATTATTGT----------TCCCCCAAAAAAAAATGGAGGTGGTANTGGTGGTTTNGG
TGGTANACGTNATNATNCCCCCCCNAAACGNGNANAANGNGGTGATNGTTNGGGTAAANG
NGAAAATGTTNCCCCCCCAAAACGTNANGAANGTNGTNATNGTTNGGGTAAANGTNATNA
TGNTNCCCCAAAAAAAAACGGNGGTGGNGGTAGTGGTTTTGGTAAAAATCAAGGAGNCCA
AGGNGATNAAAACGANANNTGGANATNCGNTTACAAAAAANAANAAAACAAAAAANAT
Length of connected seq. 888
Full length Seq ID -
Full length Seq. -
Length of full length seq. -