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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH235
Library SH
(Link to library)
Clone ID SHH235
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16076-1
Original site URL
Representative seq. ID SHH235P
(Link to Original site)
Representative DNA sequence 
>SHH235 (SHH235Q) /CSM/SH/SHH2-B/SHH235Q.Seq.d/
CAGTTGGTTCAAAAGAAAAAGAAGATTATCTAAGAGAAACCTGTGGTGATTTTATAACTG
GAATTTATTCATCAAGAAATACAGATTTCCTTGAAAATATTAAAACTGATCTTTCAAATA
AAAATGACAACAACAACAATAACAACAACAACAACAATGACAACAAAGAAAGTAACATCA
AAGAACTTCTTGATAATGATGATGATGAAATTTTACCATTTATTCATAAAAAAGGTGTTG
ATTTAATTATAAATACATTACCATTTGAATTTTTAGATACAAATTTCCTTTTACTTGGTC
AAGGTGGTAGAATTGTAGATTTATCAGTTACTCATTTAAATAATAATGATACAACTGATT
TTAGTAAATTCAAATGGTTCATTGGTTATAGTACAGTTGAAATATTTTATAATGGATTTG
AAAAATCAAAACATATATTACAATTAATAACAGATATGATTAAAAATAAAGAATTACCAT
TAATACCAATTAAAGAGTATCCAATTAATCAAATTAAAGATGCAATCGACTTTATTGGTC
AAAGAAAACATATTGGTAAAATTGTTATAAATCATAAATTAGGXXXXXXXXXXGCTGCAA
GTGTAAACTATCAAATGGGTTATGAAGATTCAAAAGTTGAAAGTGTAGAAGGTGTACTTC
AATGTTTAAGATTTTCATGTCATAATAAATTAAAGAAATTATTTCAAGTTAGCACTCTTG
GCATTTATTCAGATGATAAAAGAGATAATTTAGATGATTATACATTCGCTCAAATTGATC
CAAAAATTATTCAATCTAAAAATTCAATTATCAATGGTTATTTACAAGGTAAAATCGTAT
CAGAATATCATATTAAAGAAGCTGCAAATAGAGGTATACCTTGTTGTATCATTAGATTAC
CTTTTATTGGTCCAAATCCAAATACTGGTGTTGGTAGAGATTTAGATTTATTTCAAACAT
TATTTCAATCATGTTATGCAATGTCAACATATCCAAAACAAGAATCAGGTCTTCAATTTT
ATGCAACACCAGTTACTTGGGCAGCTCAAAACTTATCATTCATTTCATTGAATCCAAAAT
GTTGGTCAACTTCATCAAATCATCCATCATCAATTTCAGAAAATTTAACATGCTACAGTT
TATTTGGTGAATCAATTTGTTTTAATGTTTTATTAACAGAATTAGCAACACAATTAAAAT
GGAAACCAACTTCATCTGGGAATTTTTAAAGAAATTGAGATCATTCCCAAANAACCATNC
TGTAAAAAACTTCATAT
sequence update 2002.10.25
Translated Amino Acid sequence 
VGSKEKEDYLRETCGDFITGIYSSRNTDFLENIKTDLSNKNDNNNNNNNNNNDNKESNIK
ELLDNDDDEILPFIHKKGVDLIINTLPFEFLDTNFLLLGQGGRIVDLSVTHLNNNDTTDF
SKFKWFIGYSTVEIFYNGFEKSKHILQLITDMIKNKELPLIPIKEYPINQIKDAIDFIGQ
RKHIGKIVINHKL---

---AASVNYQMGYEDSKVESVEGVLQCLRFSCHNKLKKLFQVSTLGIYSDDKRDNLDDYT
FAQIDPKIIQSKNSIINGYLQGKIVSEYHIKEAANRGIPCCIIRLPFIGPNPNTGVGRDL
DLFQTLFQSCYAMSTYPKQESGLQFYATPVTWAAQNLSFISLNPKCWSTSSNHPSSISEN
LTCYSLFGESICFNVLLTELATQLKWKPTSSGNF*rn*dhsqxtxl*ktsy
Translated Amino Acid sequence (All Frames) 
Frame A:
qlvqkkkkii*ekpvvil*lefihqeiqislkilklifqikmttttitttttmttkkvts
knflimmmmkfyhlfikkvli*l*ihyhlnf*iqisfylvkvvel*iyqlli*iimiqli
lvnsngslvivqlkyfimdlknqniyyn**qi*lkiknyh*yqlksiqliklkmqstllv
kenilvkll*iin*---

---AASVNYQMGYEDSKVESVEGVLQCLRFSCHNKLKKLFQVSTLGIYSDDKRDNLDDYT
FAQIDPKIIQSKNSIINGYLQGKIVSEYHIKEAANRGIPCCIIRLPFIGPNPNTGVGRDL
DLFQTLFQSCYAMSTYPKQESGLQFYATPVTWAAQNLSFISLNPKCWSTSSNHPSSISEN
LTCYSLFGESICFNVLLTELATQLKWKPTSSGNF*rn*dhsqxtxl*ktsy

Frame B:
swfkrkrrlskrnlw*fynwnlfikkyrfp*ky*n*sfk*k*qqqq*qqqqq*qqrk*hq
rts******nftiys*krc*fnykyiti*ifrykfpftwsrw*ncrfisysfk***yn*f
**iqmvhwl*ys*nil*wi*kiktyitinnryd*k*ritintn*rvsn*sn*rcnrlyws
kktyw*ncyks*ir---

---lqv*tikwvmkiqklkv*kvyfnv*dfhviin*rnyfklallafiqmikeii*miih
slkliqklfnlkiqlsmviykvksyqniilkklqievylvvsldylllvqiqilvlvei*
iyfkhyfnhvmqcqhiqnknqvfnfmqhqllgqlktyhsfh*iqnvgqlhqiihhqfqki
*hatvylvnqfvlmfy*qn*qhn*ngnqlhlgifkeieiipkxpxckklh

Frame C:
VGSKEKEDYLRETCGDFITGIYSSRNTDFLENIKTDLSNKNDNNNNNNNNNNDNKESNIK
ELLDNDDDEILPFIHKKGVDLIINTLPFEFLDTNFLLLGQGGRIVDLSVTHLNNNDTTDF
SKFKWFIGYSTVEIFYNGFEKSKHILQLITDMIKNKELPLIPIKEYPINQIKDAIDFIGQ
RKHIGKIVINHKL---

---ckcklsngl*rfks*kcrrctsmfkifms**ikeiiss*hswhlfr**kr*fr*lyi
rsn*sknysi*kfnyqwlftr*nririsy*rsck*rytllyh*itfywskskywcw*rfr
fisniisimlcnvnisktrirssilcntsylgsskliihfieskmlvnfikssiinfrkf
nmlqfiw*inlf*cfinrisntikmetnfiweflkklrsfpxnhxvknfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH235 (SHH235Q) /CSM/SH/SHH2-B/SHH235Q.Seq.d/                       2131   0.0
VHL305 (VHL305Q) /CSM/VH/VHL3-A/VHL305Q.Seq.d/                         60   9e-08
VHJ711 (VHJ711Q) /CSM/VH/VHJ7-A/VHJ711Q.Seq.d/                         60   9e-08
CHN782 (CHN782Q) /CSM/CH/CHN7-D/CHN782Q.Seq.d/                         58   3e-07
AHG850 (AHG850Q) /CSM/AH/AHG8-C/AHG850Q.Seq.d/                         56   1e-06
VHA580 (VHA580Q) /CSM/VH/VHA5-D/VHA580Q.Seq.d/                         54   5e-06
SHF192 (SHF192Q) /CSM/SH/SHF1-D/SHF192Q.Seq.d/                         54   5e-06
SHF391 (SHF391Q) /CSM/SH/SHF3-D/SHF391Q.Seq.d/                         52   2e-05
SFH305 (SFH305Q) /CSM/SF/SFH3-A/SFH305Q.Seq.d/                         50   8e-05
CFC727 (CFC727Q) /CSM/CF/CFC7-B/CFC727Q.Seq.d/                         50   8e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF019982|AF019982.1 Dictyostelium discoideum PksA (pksA) gene, partial cds.  1138   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    66   1e-16  3
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    62   6e-08  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   2e-05  17
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12 section 3 of 9 of the complete sequence.    34   8e-05  15
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    48   2e-04  13
AF454824|AF454824.1 Enterococcus faecalis pathogenicity island, complete sequence.    42   2e-04  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   5e-04  18
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   6e-04  19
AY032999|AY032999.1 Enterococcus faecalis putative pathogenicity island, partial sequence.    42   7e-04  5
dna update 2006. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_16(AC116963|pid:none) Dictyostelium discoideum chromoso...   181   6e-44
AC116963_19(AC116963|pid:none) Dictyostelium discoideum chromoso...   181   6e-44
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...   158   3e-37
AC116305_75(AC116305|pid:none) Dictyostelium discoideum chromoso...   127   8e-28
AC116305_81(AC116305|pid:none) Dictyostelium discoideum chromoso...   126   1e-27
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...    98   5e-19
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...    98   7e-19
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...    97   9e-19
(P37693) RecName: Full=Polyketide synthase hetM;  &AE2475(AE2475...    67   1e-09
U04436_3(U04436|pid:none) Anabaena sp. PCC 7120 putative polyket...    67   1e-09
protein update 2009. 4.19
PSORT 

 psg: 0.70  gvh: 0.31  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SHH235 is cyt
5' end seq. ID SHH235F
5' end seq. 
>SHH235F.Seq
CAGTTGGTTCAAAAGAAAAAGAAGATTATCTAAGAGAAACCTGTGGTGATTTTATAACTG
GAATTTATTCATCAAGAAATACAGATTTCCTTGAAAATATTAAAACTGATCTTTCAAATA
AAAATGACAACAACAACAATAACAACAACAACAACAATGACAACAAAGAAAGTAACATCA
AAGAACTTCTTGATAATGATGATGATGAAATTTTACCATTTATTCATAAAAAAGGTGTTG
ATTTAATTATAAATACATTACCATTTGAATTTTTAGATACAAATTTCCTTTTACTTGGTC
AAGGTGGTAGAATTGTAGATTTATCAGTTACTCATTTAAATAATAATGATACAACTGATT
TTAGTAAATTCAAATGGTTCATTGGTTATAGTACAGTTGAAATATTTTATAATGGATTTG
AAAAATCAAAACATATATTACAATTAATAACAGATATGATTAAAAATAAAGAATTACCAT
TAATACCAATTAAAGAGTATCCAATTAATCAAATTAAAGATGCAATCGACTTTATTGGTC
AAAGAAAACATATTGGTAAAATTGTTATAAATCATAAATTAGGNNNNNNNNNN
Length of 5' end seq. 593
3' end seq. ID SHH235Z
3' end seq. 
>SHH235Z.Seq
NNNNNNNNNNGCTGCAAGTGTAAACTATCAAATGGGTTATGAAGATTCAAAAGTTGAAAG
TGTAGAAGGTGTACTTCAATGTTTAAGATTTTCATGTCATAATAAATTAAAGAAATTATT
TCAAGTTAGCACTCTTGGCATTTATTCAGATGATAAAAGAGATAATTTAGATGATTATAC
ATTCGCTCAAATTGATCCAAAAATTATTCAATCTAAAAATTCAATTATCAATGGTTATTT
ACAAGGTAAAATCGTATCAGAATATCATATTAAAGAAGCTGCAAATAGAGGTATACCTTG
TTGTATCATTAGATTACCTTTTATTGGTCCAAATCCAAATACTGGTGTTGGTAGAGATTT
AGATTTATTTCAAACATTATTTCAATCATGTTATGCAATGTCAACATATCCAAAACAAGA
ATCAGGTCTTCAATTTTATGCAACACCAGTTACTTGGGCAGCTCAAAACTTATCATTCAT
TTCATTGAATCCAAAATGTTGGTCAACTTCATCAAATCATCCATCATCAATTTCAGAAAA
TTTAACATGCTACAGTTTATTTGGTGAATCAATTTGTTTTAATGTTTTATTAACAGAATT
AGCAACACAATTAAAATGGAAACCAACTTCATCTGGGAATTTTTAAAGAAATTGAGATCA
TTCCCAAANAACCATNCTGTAAAAAACTTCATAT
Length of 3' end seq. 694
Connected seq. ID SHH235P
Connected seq. 
>SHH235P.Seq
CAGTTGGTTCAAAAGAAAAAGAAGATTATCTAAGAGAAACCTGTGGTGATTTTATAACTG
GAATTTATTCATCAAGAAATACAGATTTCCTTGAAAATATTAAAACTGATCTTTCAAATA
AAAATGACAACAACAACAATAACAACAACAACAACAATGACAACAAAGAAAGTAACATCA
AAGAACTTCTTGATAATGATGATGATGAAATTTTACCATTTATTCATAAAAAAGGTGTTG
ATTTAATTATAAATACATTACCATTTGAATTTTTAGATACAAATTTCCTTTTACTTGGTC
AAGGTGGTAGAATTGTAGATTTATCAGTTACTCATTTAAATAATAATGATACAACTGATT
TTAGTAAATTCAAATGGTTCATTGGTTATAGTACAGTTGAAATATTTTATAATGGATTTG
AAAAATCAAAACATATATTACAATTAATAACAGATATGATTAAAAATAAAGAATTACCAT
TAATACCAATTAAAGAGTATCCAATTAATCAAATTAAAGATGCAATCGACTTTATTGGTC
AAAGAAAACATATTGGTAAAATTGTTATAAATCATAAATTAGG----------GCTGCAA
GTGTAAACTATCAAATGGGTTATGAAGATTCAAAAGTTGAAAGTGTAGAAGGTGTACTTC
AATGTTTAAGATTTTCATGTCATAATAAATTAAAGAAATTATTTCAAGTTAGCACTCTTG
GCATTTATTCAGATGATAAAAGAGATAATTTAGATGATTATACATTCGCTCAAATTGATC
CAAAAATTATTCAATCTAAAAATTCAATTATCAATGGTTATTTACAAGGTAAAATCGTAT
CAGAATATCATATTAAAGAAGCTGCAAATAGAGGTATACCTTGTTGTATCATTAGATTAC
CTTTTATTGGTCCAAATCCAAATACTGGTGTTGGTAGAGATTTAGATTTATTTCAAACAT
TATTTCAATCATGTTATGCAATGTCAACATATCCAAAACAAGAATCAGGTCTTCAATTTT
ATGCAACACCAGTTACTTGGGCAGCTCAAAACTTATCATTCATTTCATTGAATCCAAAAT
GTTGGTCAACTTCATCAAATCATCCATCATCAATTTCAGAAAATTTAACATGCTACAGTT
TATTTGGTGAATCAATTTGTTTTAATGTTTTATTAACAGAATTAGCAACACAATTAAAAT
GGAAACCAACTTCATCTGGGAATTTTTAAAGAAATTGAGATCATTCCCAAANAACCATNC
TGTAAAAAACTTCATAT
Length of connected seq. 1267
Full length Seq ID -
Full length Seq. -
Length of full length seq. -