>SHH226 (SHH226Q) /CSM/SH/SHH2-B/SHH226Q.Seq.d/
ATTAATTAAAACTCTTTATATTTTTAAAAAAACATAATATATTATTTATTTATTTATTTT
TTTATTTTTTTATAAATATATTATATATATATATATATAAATTTAAAATGATAAAAAATT
TAATTTCAGCATTTTCACAAGGTGTTGGAATTCAAAAAAAGGAATTACCATCAACAATAA
TTTTAAATAAAGATGATTATAAAGAAGCCAATTATTATAATTATTATAGAAATTTAGAAT
TAAATAAACCAGATGAAGTATTAGCAAGAAGAATTGCAGGTTTAGCACCAATTGCATATC
AATATTATAATGTTTCAAGTTTTGATAATAATCAATTTAAAATTGTAGATTTTTCAATTG
ATTCAAAATTGAATGATACATGTTTAACATGTGTTTGGACACAAACCTATAAGAATGAAT
CAAAAACACCGGTTGAAGCAGTTTATAGAATTCCATTATCACCATTATCAACGGTATCAG
CATTTTCAGTACAATTCAATGGTAAAACATTACATGGTAAAATAAAAGATTCAACCAAGG
CACAAGAGAAATACGATGATGCAATTGCAAGTGGTGGTCAAGCATTCCTTGCAGAGAAAT
CAAAAGATGATGATAAXXXXXXXXXXCCACCCCCAGGTTCATCTTTTGGTGCACCTCCNA
CCTCCACCCCCAGGTGGAGCTTTCCCAACATCATCAATATCAGAAAAAAAATCATCATCA
CAATCATCATCATCATATTTACCACCAACAATGTCATTGTCAAGAAAATCATCATTGTCA
CCATCATCACCATCAAAAAATTATCCAAGCCCTAAACTCTCAAGTCCTTCTTTATCGTAT
GGTTCAACTCAATCAGAAAGCACTCCATCAAATGATCCATTAATTTCTTTATTAGCTAAA
CAAAAAGCAAATGGTTCTTGGAGTAAATCATCTATTCAAGATCAATTCTCTTCTGCTATT
AGTAAAATACCAAATGAACTTTCTGCTGTTGAAGACGTTTGGGCAACTTTATTAGTTATC
TCAAAAATTATGAAAACATTTGCTTCTCAAAAATCAAAATGGGAACTTAGTGTTCAAAAA
TCAAATAAATGGGTTAAACAACAATTATTAAAATTAAATCTTTCTTTTGATCAATTTTTA
GAACTTGCAAAATCAAATGTATAAAATAAAATTTAAAAAATTAATTAAAA

*LKLFIFLKKHNILFIYLFFYFFINILYIYIYKFKMIKNLISAFSQGVGIQKKELPSTII
LNKDDYKEANYYNYYRNLELNKPDEVLARRIAGLAPIAYQYYNVSSFDNNQFKIVDFSID
SKLNDTCLTCVWTQTYKNESKTPVEAVYRIPLSPLSTVSAFSVQFNGKTLHGKIKDSTKA
QEKYDDAIASGGQAFLAEKSKDDD---

---HPQVHLLVHLXPPPPGGAFPTSSISEKKSSSQSSSSYLPPTMSLSRKSSLSPSSPSK
NYPSPKLSSPSLSYGSTQSESTPSNDPLISLLAKQKANGSWSKSSIQDQFSSAISKIPNE
LSAVEDVWATLLVISKIMKTFASQKSKWELSVQKSNKWVKQQLLKLNLSFDQFLELAKSN
V*nki*kin*

Frame A:
in*nslyf*kniiyylfiyffifl*iyyiyiyinlk**ki*fqhfhkvlefkkrnyhqq*
f*ikmiikkpiiiiiiei*n*inqmky*qeelqv*hqlhiniimfqvliiinlkl*ifql
iqn*mihv*hvfghkpirmnqkhrlkqfiefhyhhyqryqhfqynsmvkhymvk*kiqpr
hkrntmmqlqvvvkhslqrnqkmmi---

---pppgssfgapptstprwsfpniinirkkiiitiiiiifttnnvivkkiiivtiitik
klskp*tlksffivwfnsirkhsik*sinffis*tkskwfle*iiysrsilfcy**ntk*
tfcc*rrlgnfisylknyenicfskikmgt*cskik*mg*ttiikiksff*sifrtckik
cik*nlkn*lk

Frame B:
liktlyifkkt*yiiylfiflffykyiiyiyi*i*ndkkfnfsiftrcwnskkgitinnn
fk*r*l*rsqll*ll*kfrik*tr*siskkncrfstncisil*cfkf***si*ncrffn*
fkie*ymfnmcldtnl*e*ikntg*ssl*nsiitiingisifstiqw*nitw*nkrfnqg
treir*cnckwwssipcreikr***---

---HPQVHLLVHLXPPPPGGAFPTSSISEKKSSSQSSSSYLPPTMSLSRKSSLSPSSPSK
NYPSPKLSSPSLSYGSTQSESTPSNDPLISLLAKQKANGSWSKSSIQDQFSSAISKIPNE
LSAVEDVWATLLVISKIMKTFASQKSKWELSVQKSNKWVKQQLLKLNLSFDQFLELAKSN
V*nki*kin*

Frame C:
*LKLFIFLKKHNILFIYLFFYFFINILYIYIYKFKMIKNLISAFSQGVGIQKKELPSTII
LNKDDYKEANYYNYYRNLELNKPDEVLARRIAGLAPIAYQYYNVSSFDNNQFKIVDFSID
SKLNDTCLTCVWTQTYKNESKTPVEAVYRIPLSPLSTVSAFSVQFNGKTLHGKIKDSTKA
QEKYDDAIASGGQAFLAEKSKDDD---

---tprfifwctsxlhpqvelsqhhqyqkknhhhnhhhhiyhqqchcqenhhchhhhhqk
iiqalnsqvllyrmvqlnqkalhqmih*fly*lnkkqmvlgvnhlfkinsllllvkyqmn
flllktfgqly*lsqkl*khlllknqngnlvfknqinglnnny*n*ifllinf*nlqnqm
ykikfkklik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH226 (SHH226Q) /CSM/SH/SHH2-B/SHH226Q.Seq.d/                       1090   0.0
SHC765 (SHC765Q) /CSM/SH/SHC7-C/SHC765Q.Seq.d/                        946   0.0
SHF878 (SHF878Q) /CSM/SH/SHF8-D/SHF878Q.Seq.d/                        944   0.0
SHB726 (SHB726Q) /CSM/SH/SHB7-B/SHB726Q.Seq.d/                        819   0.0
VHO312 (VHO312Q) /CSM/VH/VHO3-A/VHO312Q.Seq.d/                        817   0.0
SSI308 (SSI308Q) /CSM/SS/SSI3-A/SSI308Q.Seq.d/                        817   0.0
SHK279 (SHK279Q) /CSM/SH/SHK2-D/SHK279Q.Seq.d/                        817   0.0
SHE555 (SHE555Q) /CSM/SH/SHE5-C/SHE555Q.Seq.d/                        817   0.0
SFJ827 (SFJ827Q) /CSM/SF/SFJ8-B/SFJ827Q.Seq.d/                        817   0.0
CHG479 (CHG479Q) /CSM/CH/CHG4-D/CHG479Q.Seq.d/                        817   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44   1e-07  14
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    36   3e-04  11
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   0.002  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.002  16
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40   0.003  8
BF551843|BF551843.1 UI-R-Y0-lt-c-09-0-UI.r1 UI-R-Y0 Rattus norvegicus cDNA clone UI-R-Y0-lt-c-09-0-UI 5', mRNA sequence.    54   0.008  1
AC128804|AC128804.3 Rattus norvegicus clone CH230-144F16, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    54   0.008  1
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome.    36   0.009  20
AC178153|AC178153.1 Strongylocentrotus purpuratus clone R3-3079A12, WORKING DRAFT SEQUENCE, 15 unordered pieces.    48   0.021  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.024  14

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK304399_1(AK304399|pid:none) Homo sapiens cDNA FLJ61556 complet...    62   3e-08
(Q9UKK3) RecName: Full=Poly [ADP-ribose] polymerase 4;          ...    62   3e-08
AF057160_1(AF057160|pid:none) Homo sapiens putative poly(ADP-rib...    62   3e-08
AB384443_1(AB384443|pid:none) Synthetic construct DNA, clone: pF...    62   3e-08
AK019914_1(AK019914|pid:none) Mus musculus adult male pituitary ...    59   3e-07
(Q99KC8) RecName: Full=Loss of heterozygosity 11 chromosomal reg...    59   3e-07
AY366502_1(AY366502|pid:none) Mus musculus BCSC1 (Bcsc1) mRNA, c...    59   3e-07
BC080948_1(BC080948|pid:none) Xenopus tropicalis loh11cr2a prote...    58   5e-07
AM746676_2133(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    58   7e-07
AK172907_1(AK172907|pid:none) Mus musculus mRNA for mKIAA0177 pr...    58   7e-07

 psg: 0.98  gvh: 0.45  alm: 0.23  top: 0.43  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SHH226 is end

>SHH226F.Seq
ATTAATTAAAACTCTTTATATTTTTAAAAAAACATAATATATTATTTATTTATTTATTTT
TTTATTTTTTTATAAATATATTATATATATATATATATAAATTTAAAATGATAAAAAATT
TAATTTCAGCATTTTCACAAGGTGTTGGAATTCAAAAAAAGGAATTACCATCAACAATAA
TTTTAAATAAAGATGATTATAAAGAAGCCAATTATTATAATTATTATAGAAATTTAGAAT
TAAATAAACCAGATGAAGTATTAGCAAGAAGAATTGCAGGTTTAGCACCAATTGCATATC
AATATTATAATGTTTCAAGTTTTGATAATAATCAATTTAAAATTGTAGATTTTTCAATTG
ATTCAAAATTGAATGATACATGTTTAACATGTGTTTGGACACAAACCTATAAGAATGAAT
CAAAAACACCGGTTGAAGCAGTTTATAGAATTCCATTATCACCATTATCAACGGTATCAG
CATTTTCAGTACAATTCAATGGTAAAACATTACATGGTAAAATAAAAGATTCAACCAAGG
CACAAGAGAAATACGATGATGCAATTGCAAGTGGTGGTCAAGCATTCCTTGCAGAGAAAT
CAAAAGATGATGATAANNNNNNNNNN

>SHH226Z.Seq
NNNNNNNNNNCCACCCCCAGGTTCATCTTTTGGTGCACCTCCNACCTCCACCCCCAGGTG
GAGCTTTCCCAACATCATCAATATCAGAAAAAAAATCATCATCACAATCATCATCATCAT
ATTTACCACCAACAATGTCATTGTCAAGAAAATCATCATTGTCACCATCATCACCATCAA
AAAATTATCCAAGCCCTAAACTCTCAAGTCCTTCTTTATCGTATGGTTCAACTCAATCAG
AAAGCACTCCATCAAATGATCCATTAATTTCTTTATTAGCTAAACAAAAAGCAAATGGTT
CTTGGAGTAAATCATCTATTCAAGATCAATTCTCTTCTGCTATTAGTAAAATACCAAATG
AACTTTCTGCTGTTGAAGACGTTTGGGCAACTTTATTAGTTATCTCAAAAATTATGAAAA
CATTTGCTTCTCAAAAATCAAAATGGGAACTTAGTGTTCAAAAATCAAATAAATGGGTTA
AACAACAATTATTAAAATTAAATCTTTCTTTTGATCAATTTTTAGAACTTGCAAAATCAA
ATGTATAAAATAAAATTTAAAAAATTAATTAAAA

>SHH226P.Seq
ATTAATTAAAACTCTTTATATTTTTAAAAAAACATAATATATTATTTATTTATTTATTTT
TTTATTTTTTTATAAATATATTATATATATATATATATAAATTTAAAATGATAAAAAATT
TAATTTCAGCATTTTCACAAGGTGTTGGAATTCAAAAAAAGGAATTACCATCAACAATAA
TTTTAAATAAAGATGATTATAAAGAAGCCAATTATTATAATTATTATAGAAATTTAGAAT
TAAATAAACCAGATGAAGTATTAGCAAGAAGAATTGCAGGTTTAGCACCAATTGCATATC
AATATTATAATGTTTCAAGTTTTGATAATAATCAATTTAAAATTGTAGATTTTTCAATTG
ATTCAAAATTGAATGATACATGTTTAACATGTGTTTGGACACAAACCTATAAGAATGAAT
CAAAAACACCGGTTGAAGCAGTTTATAGAATTCCATTATCACCATTATCAACGGTATCAG
CATTTTCAGTACAATTCAATGGTAAAACATTACATGGTAAAATAAAAGATTCAACCAAGG
CACAAGAGAAATACGATGATGCAATTGCAAGTGGTGGTCAAGCATTCCTTGCAGAGAAAT
CAAAAGATGATGATAA----------CCACCCCCAGGTTCATCTTTTGGTGCACCTCCNA
CCTCCACCCCCAGGTGGAGCTTTCCCAACATCATCAATATCAGAAAAAAAATCATCATCA
CAATCATCATCATCATATTTACCACCAACAATGTCATTGTCAAGAAAATCATCATTGTCA
CCATCATCACCATCAAAAAATTATCCAAGCCCTAAACTCTCAAGTCCTTCTTTATCGTAT
GGTTCAACTCAATCAGAAAGCACTCCATCAAATGATCCATTAATTTCTTTATTAGCTAAA
CAAAAAGCAAATGGTTCTTGGAGTAAATCATCTATTCAAGATCAATTCTCTTCTGCTATT
AGTAAAATACCAAATGAACTTTCTGCTGTTGAAGACGTTTGGGCAACTTTATTAGTTATC
TCAAAAATTATGAAAACATTTGCTTCTCAAAAATCAAAATGGGAACTTAGTGTTCAAAAA
TCAAATAAATGGGTTAAACAACAATTATTAAAATTAAATCTTTCTTTTGATCAATTTTTA
GAACTTGCAAAATCAAATGTATAAAATAAAATTTAAAAAATTAATTAAAA