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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH219
Library SH
(Link to library)
Clone ID SHH219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHH219P
(Link to Original site)
Representative DNA sequence 
>SHH219 (SHH219Q) /CSM/SH/SHH2-A/SHH219Q.Seq.d/
AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA
ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT
TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA
ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC
CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG
AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC
AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAGTTT
TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT
TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCAA
CCAAAGXXXXXXXXXXACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAA
GTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGA
ACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATC
CTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGAT
AAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGAT
ATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTA
AGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCT
TTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGT
TACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAA
GAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGAT
TTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAA
AAAAAAATAAAAAATAAATAAAATNCTATNCTGTTTTTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
*iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKTN
TILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAKQ
PVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGAT
K---

---SVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGE
QANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSV
EKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQ
GVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kkiknk*nxxlff*
Translated Amino Acid sequence (All Frames) 
Frame A:
nk**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllikq
iqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*pn
nlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlvq
pk---

---tv*yclmklkklinkfgmfsykywmkvvlpmvkvep*isqmllsl*pqi*vvntslv
nkqtkkvvttlyhklvkikslmklenisvqsf*ivsmi*lsllh*vkktfivlllfn*dp
skrd*kikicl*rfqtml*iqlsmlhmiqslvvdh*nvtlkrilslnlvnsslvvn*kki
kvllsmkkiiistlil*i*nnnnnvqllqpknkkllnkkk*kinkxlxcffk

Frame B:
innn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**nk
ynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisqt
tcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwcn
q---

---qcsiv**s*kssstslecsltsig*rssyrwsr*nrrflkccyhydlkfr*sihpw*
tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssr*ynclysie*rkps*yyyssikir
rkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*keych*t**thpww*ikrks
rcccq*krsssql*yyrfktttttssfsnqktkny*ikknkk*ikxyxvfl

Frame C:
*iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKTN
TILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAKQ
PVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGAT
K---

---SVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGE
QANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSV
EKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQ
GVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kkiknk*nxxlff*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1229   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1229   0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                       1229   0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/                       1229   0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/                       1229   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1229   0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/                       1229   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1229   0.0
SHL591 (SHL591Q) /CSM/SH/SHL5-D/SHL591Q.Seq.d/                       1229   0.0
SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/                       1229   0.0
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence.    66   1e-08  2
AE017143|AE017143.1 Haemophilus ducreyi strain 35000HP complete genome.    50   7e-06  2
AE017152|AE017152.1 Haemophilus ducreyi strain 35000HP section 2 of 6 of the complete genome.    50   7e-06  2
L42023|L42023.1 Haemophilus influenzae Rd KW20, complete genome.    44   9e-05  2
AR632719|AR632719.1 Sequence 1 from patent US 6846651.             44   9e-05  2
AR274513|AR274513.1 Sequence 1 from patent US 6506581.             44   9e-05  2
BD426631|BD426631.1 The Nucleotide Sequence of the Haemophilus influenzae Rd Genome,Fragments Thereof, and Uses Thereof.    44   9e-05  2
U32767|U32767.1 Haemophilus influenzae Rd section 82 of 163 of the complete genome.    44   1e-04  2
BD425742|BD425742.1 The Nucleotide Sequence of the Haemophilus influenzae Rd Genome,Fragments Thereof, and Uses Thereof.    44   1e-04  2
CP000082|CP000082.1 Psychrobacter arcticus 273-4, complete genome.    48   3e-04  2
dna update 2006. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   201   4e-50
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   200   7e-50
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   200   7e-50
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   200   9e-50
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   199   2e-49
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   198   3e-49
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   198   3e-49
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote...   198   3e-49
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...   198   4e-49
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   197   5e-49
protein update 2009. 4.19
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHH219 is cyt
5' end seq. ID SHH219F
5' end seq. 
>SHH219F.Seq
AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA
ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT
TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA
ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC
CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG
AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC
AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAGTTT
TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT
TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCAA
CCAAAGNNNNNNNNNN
Length of 5' end seq. 556
3' end seq. ID SHH219Z
3' end seq. 
>SHH219Z.Seq
NNNNNNNNNNACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGG
AATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTA
GATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGT
GAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTC
ATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATT
GTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCC
GTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGAT
TCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATT
GAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAAT
CAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAA
CAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAA
ATAAAAAATAAATAAAATNCTATNCTGTTTTTTTAAA
Length of 3' end seq. 697
Connected seq. ID SHH219P
Connected seq. 
>SHH219P.Seq
AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA
ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT
TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA
ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC
CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG
AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC
AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAGTTT
TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT
TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCAA
CCAAAG----------ACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAA
GTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGA
ACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATC
CTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGAT
AAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGAT
ATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTA
AGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCT
TTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGT
TACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAA
GAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGAT
TTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAA
AAAAAAATAAAAAATAAATAAAATNCTATNCTGTTTTTTTAAA
Length of connected seq. 1233
Full length Seq ID -
Full length Seq. -
Length of full length seq. -