SHH217
Library SH
(Link to library)
Clone ID SHH217
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID SHH217P
(Link to Original site)
Representative DNA sequence
>SHH217 (SHH217Q) /CSM/SH/SHH2-A/SHH217Q.Seq.d/
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
ANGGTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAA
AATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATT
CAAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGT
CCANATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAA
ATGCCAAAAGATGANAAATTACCAACTGGTTGTAGCXXXXXXXXXXCGTGCCAATTATCT
CTATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGA
ATATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAAT
TAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGA
GAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCA
TAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATC
AGCTCAACCAACACTTTTGGAACTAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGG
TATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACG
TCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGG
TCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGA
TCATTGGAGTTCAATTGGTATCGTNGGTCAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
visiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKK
XVNFTIXQIRSIMDRRENIKNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCR
PXEQLRGITIKSSSVSLHFEMPKDXKLPTGCS---

---RANYLYDKHSWDKNDAVNIWSFGPEYKGPNVLVNKTKGVQYLHEIKDSMVSAFQWIS
NEGVLCGEKMRSIRFNVYDVMLHADAIHRGSGQFIPTTRRVMYASQLSAQPTLLELMYLV
DISTPESGISGIYSVLNRRRGVVIGEERRIGTPLFNIKAYLPVMESFGLTADLRSSTAGQ
AFPQCVFDHWSSIGIVGQKK


Translated Amino Acid sequence (All Frames)
Frame A:
visiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKK
XVNFTIXQIRSIMDRRENIKNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCR
PXEQLRGITIKSSSVSLHFEMPKDXKLPTGCS---

---RANYLYDKHSWDKNDAVNIWSFGPEYKGPNVLVNKTKGVQYLHEIKDSMVSAFQWIS
NEGVLCGEKMRSIRFNVYDVMLHADAIHRGSGQFIPTTRRVMYASQLSAQPTLLELMYLV
DISTPESGISGIYSVLNRRRGVVIGEERRIGTPLFNIKAYLPVMESFGLTADLRSSTAGQ
AFPQCVFDHWSSIGIVGQKK

Frame B:
syq**illhiqnkinkt*tlffpyigqtliclctiilfkllllkfilktliskktktkkk
xsilqxikfvqlwivxkiskicllllmlimvkllllih*fkelvllxirylvmqdichvv
xmnnyvvlp*shhlfhftlkcqkmxnyqlvv---

---vpiisminilgirmmqltfghlvqnirvqmf*ltkpkvfnifmklktlwfqhsngsq
mkvyyvvrk*drfvstfmm*cfmpmqfievvvnlfqqlvv*cmppnyqlnqhfwn*ciwl
ilvllkvvlvvstlysiveevlslvknvvlvlhysisklifl*wnhlvslliyvqvllvk
lslnvfliigvqlvsxvkkk

Frame C:
hinnkyyyiyktkliklklyfsptlakl*fafvqlfslnsyy*nsf*klsflkklkqkkx
gqfynxsnsfnygssxkyqkyvcycsc*sw*nysy*finskswyycx*giw*criyvmss
x*titwyyhkviicftsl*nakr*xitnwl*---

---cqlsl**tflg*e*cs*hlviwsri*gskcfs*qnqrcsiss*n*rlygfsipmdlk
*rcimw*eneidsfqrl*cnascrcns*r*wsiysnnsscnvclptisstntfgtnvfg*
y*ys*kwy*wyllctqs*krcchw*rtsywysiiqyqslsscngiiwshc*ftfkycwss
fpsmcf*slefnwyrxskk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHH217 (SHH217Q) /CSM/SH/SHH2-A/SHH217Q.Seq.d/ 1624 0.0
VHP840 (VHP840Q) /CSM/VH/VHP8-B/VHP840Q.Seq.d/ 1142 0.0
VHN741 (VHN741Q) /CSM/VH/VHN7-B/VHN741Q.Seq.d/ 1142 0.0
VHM691 (VHM691Q) /CSM/VH/VHM6-D/VHM691Q.Seq.d/ 1142 0.0
VHK348 (VHK348Q) /CSM/VH/VHK3-B/VHK348Q.Seq.d/ 1142 0.0
VHJ186 (VHJ186Q) /CSM/VH/VHJ1-D/VHJ186Q.Seq.d/ 1142 0.0
VHD358 (VHD358Q) /CSM/VH/VHD3-C/VHD358Q.Seq.d/ 1142 0.0
VHC477 (VHC477Q) /CSM/VH/VHC4-D/VHC477Q.Seq.d/ 1142 0.0
VHB815 (VHB815Q) /CSM/VH/VHB8-A/VHB815Q.Seq.d/ 1142 0.0
VHB107 (VHB107Q) /CSM/VH/VHB1-A/VHB107Q.Seq.d/ 1142 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 137 7e-94 8
X15386|X15386.1 Dictyostelium discoideum H6 gene mRNA. 131 4e-31 2
BI863585|BI863585.1 kx46a06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 3e-19 4
BI863575|BI863575.1 kx45h07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence. 66 6e-16 3
BI451383|BI451383.1 kx23e09.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 6e-16 3
BM056853|BM056853.1 2154-85 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2154-85, mRNA sequence. 92 3e-14 1
DR447725|DR447725.1 AR1047E10 A. gomesiana hemocytes normalized library Acanthoscurria gomesiana cDNA clone AR1047E10 5', mRNA sequence. 88 5e-14 2
DR443579|DR443579.1 AR2018A03 A. gomesiana hemocytes library Acanthoscurria gomesiana cDNA clone AR2018A03 5', mRNA sequence. 88 6e-14 2
BM058578|BM058578.1 2193-94 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-94, mRNA sequence. 90 1e-13 1
BM058379|BM058379.1 2191-29 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2191-29, mRNA sequence. 90 1e-13 1
dna update 2006. 4. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 245 2e-63
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 243 8e-63
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 243 8e-63
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 243 8e-63
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 242 1e-62
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran... 242 1e-62
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 242 2e-62
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 242 2e-62
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 240 5e-62
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 240 5e-62
protein update 2009. 4.19
PSORT

psg: 0.80 gvh: 0.43 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SHH217 is nuc

5' end seq. ID SHH217F
5' end seq.
>SHH217F.Seq
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
ANGGTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAA
AATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATT
CAAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGT
CCANATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAA
ATGCCAAAAGATGANAAATTACCAACTGGTTGTAGCNNNNNNNNNN
Length of 5' end seq. 466
3' end seq. ID SHH217Z
3' end seq.
>SHH217Z.Seq
NNNNNNNNNNCGTGCCAATTATCTCTATGATAAACATTCTTGGGATAAGAATGATGCAGT
TAACATTTGGTCATTTGGTCCAGAATATAAGGGTCCAAATGTTTTAGTTAACAAAACCAA
AGGTGTTCAATATCTTCATGAAATTAAAGACTCTATGGTTTCAGCATTCCAATGGATCTC
AAATGAAGGTGTATTATGTGGTGAGAAAATGAGATCGATTCGTTTCAACGTTTATGATGT
AATGCTTCATGCCGATGCAATTCATAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCG
TGTAATGTATGCCTCCCAACTATCAGCTCAACCAACACTTTTGGAACTAATGTATTTGGT
TGATATTAGTACTCCTGAAAGTGGTATTAGTGGTATCTACTCTGTACTCAATCGTAGAAG
AGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTACTCCATTATTCAATATCAAAGCTTA
TCTTCCTGTAATGGAATCATTTGGTCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCA
AGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTTCAATTGGTATCGTNGGTCAAAAAAA
AA
Length of 3' end seq. 602
Connected seq. ID SHH217P
Connected seq.
>SHH217P.Seq
GTCATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTT
ATTTTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACT
CTTATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAA
ANGGTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAA
AATATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATT
CAAAGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGT
CCANATGAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAA
ATGCCAAAAGATGANAAATTACCAACTGGTTGTAGC----------CGTGCCAATTATCT
CTATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGA
ATATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAAT
TAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGA
GAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAATTCA
TAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATC
AGCTCAACCAACACTTTTGGAACTAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGG
TATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACG
TCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGG
TCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGA
TCATTGGAGTTCAATTGGTATCGTNGGTCAAAAAAAAA
Length of connected seq. 1048
Full length Seq ID -
Full length Seq. -
Length of full length seq. -