>SHH216 (SHH216Q) /CSM/SH/SHH2-A/SHH216Q.Seq.d/
ATTATTATTTATTTTTATTATTTTTTTATTTAATTAAAAAAATAATTATACACTTCTTAC
AACCATTACTCACACTTTTTTTTTTTTTTTNANAATTTNATTTTTTTCANACNACTNAAA
AAANNTGGGGGTTTNAAAAATAAATAAAATNTANCNTANTTAATNTAAAANAAAATNTAA
AATAAAATAAAATAAAANAAAATANTTTAATAAANCAAANTTNAAAATTNTTNTTAATNT
ANAATTAATNCAAAATAAATAAATNGATAAATAAATAAATAAATAANTAAATAAATAAAT
AAATAAATAANTAANTAAATAANTAAATAANTAAATAANTAANTAAATXXXXXXXXXX

YYLFLLFFYLIKKIIIHFLQPLLTLFFFFXXFXFFXTTXKXWGFXK*ikxxxxnxkxnxk
*nkikxnxlixqxxkxxlxxn*xkinkxink*inx*ink*inx*xnx*ixk*xxk---

Frame A:
iiiyfyyffi*lkk*lytsynhyshfffffxnxiffxxlkkxggxknk*nxxxlx*xkx*
nkik*xkix**xkxxnxx*xxinxk*inx*ink*ixk*ink*ixx*ixk*xnx*x---


Frame B:
llfifiiflfn*knnytllttithtffffxxixffsxxxkxxgvxkinkxxxx*xkxkxk
ik*nkxkxfnkxxxkixxnxxlxqnk*xdk*ink*xnk*ink*xxk*xnx*ixx*---


Frame C:
YYLFLLFFYLIKKIIIHFLQPLLTLFFFFXXFXFFXTTXKXWGFXK*ikxxxxnxkxnxk
*nkikxnxlixqxxkxxlxxn*xkinkxink*inx*ink*inx*xnx*ixk*xxk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH216 (SHH216Q) /CSM/SH/SHH2-A/SHH216Q.Seq.d/                         86   4e-16
SSG312 (SSG312Q) /CSM/SS/SSG3-A/SSG312Q.Seq.d/                         36   0.34
SSE271 (SSE271Q) /CSM/SS/SSE2-C/SSE271Q.Seq.d/                         36   0.34
SSE270 (SSE270Q) /CSM/SS/SSE2-C/SSE270Q.Seq.d/                         36   0.34
SSC825 (SSC825Q) /CSM/SS/SSC8-B/SSC825Q.Seq.d/                         36   0.34
AFD538 (AFD538Q) /CSM/AF/AFD5-B/AFD538Q.Seq.d/                         36   0.34
SSD188 (SSD188Q) /CSM/SS/SSD1-D/SSD188Q.Seq.d/                         34   1.4
SHD523 (SHD523Q) /CSM/SH/SHD5-A/SHD523Q.Seq.d/                         34   1.4
CHA695 (CHA695Q) /CSM/CH/CHA6-D/CHA695Q.Seq.d/                         34   1.4
CFG453 (CFG453Q) /CSM/CF/CFG4-C/CFG453Q.Seq.d/                         34   1.4

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC079638|AC079638.3 Genomic sequence for Mus musculus, clone RP23-274A20, complete sequence.    44   2.1    1
BY480039|BY480039.1 Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370130A13, 3' end partial sequence.    42   8.3    1
AL049779|AL049779.6 Human chromosome 14 DNA sequence BAC R-1012A1 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    42   8.3    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 100,179,276

 psg: 0.98  gvh: 0.65  alm: 17.64  top: 0.40  tms: -0.07  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane

>> prediction for SHH216 is cyt

>SHH216F.Seq
ATTATTATTTATTTTTATTATTTTTTTATTTAATTAAAAAAATAATTATACACTTCTTAC
AACCATTACTCACACTTTTTTTTTTTTTTTNANAATTTNATTTTTTTCANACNACTNAAA
AAANNTGGGGGTTTNAAAAATAAATAAAATNTANCNTANTTAATNTAAAANAAAATNTAA
AATAAAATAAAATAAAANAAAATANTTTAATAAANCAAANTTNAAAATTNTTNTTAATNT
ANAATTAATNCAAAATAAATAAATNGATAAATAAATAAATAAATAANTAAATAAATAAAT
AAATAAATAANTAANTAAATAANTAAATAANTAAATAANTAANTAAATNNNNNNNNNN