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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH202
Library SH
(Link to library)
Clone ID SHH202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID SHH202P
(Link to Original site)
Representative DNA sequence 
>SHH202 (SHH202Q) /CSM/SH/SHH2-A/SHH202Q.Seq.d/
ATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATTTT
TCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTTAT
TATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAATGGTC
AATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAAATATCANAAATATG
TCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAAAGA
GCTGGTATTATTGCAGATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCAGAT
GAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATGCCA
AAAGATGAGAAATTACCAACTGGTTGTAGCTCACACGAATTCTTGATCAATCTTATTGAT
TCACCAGGTCATGTTGATTTTAGTTCTGAAGTAACAGCAGCACTTCGTGTTACCGATGGT
GCATTGGTAGTTATCGATTGTGTTGAXXXXXXXXXXCCAAAGGTGTTCAATATCTTCATG
AAATTAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTG
GTGAGAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAA
TTCATAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAAC
TATCAGCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAA
GTGGTATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAG
AACGTCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCAT
TTGGTCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTT
TTGATCATTGGAGTTCAATTGGTATCGTTGGTCAAGATAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
innkyyyiyktkliklklyfsptlakl*fafvqlfslnsyy*nsf*KLSFLKKLKQKKMV
NFTIDQIRSIMDRRENIXNMSVIAHVDHGKTTLTDSLIQRAGIIADKVSGNAGYMSCRPD
EQLRGITIKSSSVSLHFEMPKDEKLPTGCSSHEFLINLIDSPGHVDFSSEVTAALRVTDG
ALVVIDCV---

---KGVQYLHEIKDSMVSAFQWISNEGVLCGEKMRSIRFNVYDVMLHADAIHRGSGQFIP
TTRRVMYASQLSAQPTLLEPMYLVDISTPESGISGIYSVLNRRRGVVIGEERRIGTPLFN
IKAYLPVMESFGLTADLRSSTAGQAFPQCVFDHWSSIGIVGQDKK
Translated Amino Acid sequence (All Frames) 
Frame A:
innkyyyiyktkliklklyfsptlakl*fafvqlfslnsyy*nsf*KLSFLKKLKQKKMV
NFTIDQIRSIMDRRENIXNMSVIAHVDHGKTTLTDSLIQRAGIIADKVSGNAGYMSCRPD
EQLRGITIKSSSVSLHFEMPKDEKLPTGCSSHEFLINLIDSPGHVDFSSEVTAALRVTDG
ALVVIDCV---

---pkvfnifmklktlwfqhsngsqmkvyyvvrk*drfvstfmm*cfmpmqfievvvnlf
qqlvv*cmppnyqlnqhfwnqciwlilvllkvvlvvstlysiveevlslvknvvlvlhys
isklifl*wnhlvslliyvqvllvklslnvfliigvqlvslvkik

Frame B:
siiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*nkkkws
ilq*ikfvqlwivvkisxicllllmlimvkllllih*fkelvllqirylvmqdichvvqm
nnyvvlp*shhlfhftlkcqkmrnyqlvvahtns*sillihqvmlilvlk*qqhfvlpmv
hw*lsivl---

---qrcsiss*n*rlygfsipmdlk*rcimw*eneidsfqrl*cnascrcns*r*wsiys
nnsscnvclptisstntfgtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsywysiiq
yqslsscngiiwshc*ftfkycwssfpsmcf*slefnwyrwsr*k

Frame C:
q**illhiqnkinkt*tlffpyigqtliclctiilfkllllkfilktliskktktkkngq
fynrsnsfnygss*kyxkyvcycsc*sw*nysy*finskswyycr*giw*criyvmssr*
titwyyhkviicftsl*nakr*eitnwl*ltrildqsy*ftrsc*f*f*snsstscyrwc
igsyrlc*---

---KGVQYLHEIKDSMVSAFQWISNEGVLCGEKMRSIRFNVYDVMLHADAIHRGSGQFIP
TTRRVMYASQLSAQPTLLEPMYLVDISTPESGISGIYSVLNRRRGVVIGEERRIGTPLFN
IKAYLPVMESFGLTADLRSSTAGQAFPQCVFDHWSSIGIVGQDKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH202 (SHH202Q) /CSM/SH/SHH2-A/SHH202Q.Seq.d/                       1697   0.0
CHG233 (CHG233Q) /CSM/CH/CHG2-B/CHG233Q.Seq.d/                        967   0.0
VHP840 (VHP840Q) /CSM/VH/VHP8-B/VHP840Q.Seq.d/                        963   0.0
VHN741 (VHN741Q) /CSM/VH/VHN7-B/VHN741Q.Seq.d/                        963   0.0
VHK348 (VHK348Q) /CSM/VH/VHK3-B/VHK348Q.Seq.d/                        963   0.0
VHK264 (VHK264Q) /CSM/VH/VHK2-C/VHK264Q.Seq.d/                        963   0.0
VHJ186 (VHJ186Q) /CSM/VH/VHJ1-D/VHJ186Q.Seq.d/                        963   0.0
VHI582 (VHI582Q) /CSM/VH/VHI5-D/VHI582Q.Seq.d/                        963   0.0
VHH483 (VHH483Q) /CSM/VH/VHH4-D/VHH483Q.Seq.d/                        963   0.0
VHG693 (VHG693Q) /CSM/VH/VHG6-D/VHG693Q.Seq.d/                        963   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds.   188   e-120  7
AY310285|AY310285.1 Scutigera coleoptrata voucher Scol elongation factor 2 mRNA, partial cds.    82   2e-26  3
BI863585|BI863585.1 kx46a06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    66   2e-20  4
CO112841|CO112841.1 GR__Eb0049L19.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0049L19 3', mRNA sequence.    74   1e-18  2
CO099234|CO099234.1 GR__Ea23P22.f GR__Ea Gossypium raimondii cDNA clone GR__Ea23P22 5', mRNA sequence.    74   1e-18  2
CO099235|CO099235.1 GR__Ea23P22.r GR__Ea Gossypium raimondii cDNA clone GR__Ea23P22 3', mRNA sequence.    74   1e-18  2
BI863575|BI863575.1 kx45h07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence.    66   4e-17  3
BI451383|BI451383.1 kx23e09.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence.    66   4e-17  3
AY310258|AY310258.1 Glomeridesmus trinidadensis voucher Gtri elongation factor 2 mRNA, partial cds.    76   8e-16  2
L02417|L02417.1 Entamoeba histolytica translation elongation factor-2 (EF-2) mRNA, complete cds.    54   8e-16  3
dna update 2006. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P28996) RecName: Full=Elongation factor 2;          Short=EF-2;...   210   7e-53
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi...   207   6e-52
AF544973_1(AF544973|pid:none) Ctenopharyngodon idella elongation...   207   6e-52
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   206   8e-52
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088...   206   1e-51
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328...   206   1e-51
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote...   205   2e-51
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ...   205   2e-51
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120...   205   2e-51
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran...   205   2e-51
protein update 2009. 4.19
PSORT 

 psg: 0.66  gvh: 0.43  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SHH202 is nuc
5' end seq. ID SHH202F
5' end seq. 
>SHH202F.Seq
ATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATTTT
TCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTTAT
TATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAATGGTC
AATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAAATATCANAAATATG
TCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAAAGA
GCTGGTATTATTGCAGATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCAGAT
GAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATGCCA
AAAGATGAGAAATTACCAACTGGTTGTAGCTCACACGAATTCTTGATCAATCTTATTGAT
TCACCAGGTCATGTTGATTTTAGTTCTGAAGTAACAGCAGCACTTCGTGTTACCGATGGT
GCATTGGTAGTTATCGATTGTGTTGANNNNNNNNNN
Length of 5' end seq. 576
3' end seq. ID SHH202Z
3' end seq. 
>SHH202Z.Seq
NNNNNNNNNNCCAAAGGTGTTCAATATCTTCATGAAATTAAAGACTCTATGGTTTCAGCA
TTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAGATCGATTCGTTTC
AACGTTTATGATGTAATGCTTCATGCCGATGCAATTCATAGAGGTAGTGGTCAATTTATT
CCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACCAACACTTTTGGAA
CCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGGTATCTACTCTGTA
CTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGGTACTCCATTATTC
AATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGCTGATTTACGTTCA
AGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAGTTCAATTGGTATC
GTTGGTCAAGATAAAAAA
Length of 3' end seq. 498
Connected seq. ID SHH202P
Connected seq. 
>SHH202P.Seq
ATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATTTT
TCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAATTATTCTCTTTAAACTCTTAT
TATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAATGGTC
AATTTTACAATAGATCAAATTCGTTCAATTATGGATCGTCGTGAAAATATCANAAATATG
TCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAAAGA
GCTGGTATTATTGCAGATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCAGAT
GAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATGCCA
AAAGATGAGAAATTACCAACTGGTTGTAGCTCACACGAATTCTTGATCAATCTTATTGAT
TCACCAGGTCATGTTGATTTTAGTTCTGAAGTAACAGCAGCACTTCGTGTTACCGATGGT
GCATTGGTAGTTATCGATTGTGTTGA----------CCAAAGGTGTTCAATATCTTCATG
AAATTAAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTG
GTGAGAAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCAA
TTCATAGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAAC
TATCAGCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAA
GTGGTATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAG
AACGTCGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCAT
TTGGTCTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTT
TTGATCATTGGAGTTCAATTGGTATCGTTGGTCAAGATAAAAAA
Length of connected seq. 1054
Full length Seq ID -
Full length Seq. -
Length of full length seq. -