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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH195
Library SH
(Link to library)
Clone ID SHH195
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11117-1
Original site URL
Representative seq. ID SHH195P
(Link to Original site)
Representative DNA sequence 
>SHH195 (SHH195Q) /CSM/SH/SHH1-D/SHH195Q.Seq.d/
ATTTATATTTTTCAATACTAAATTAATCATCCTAATAATTCAATACCAACTTTATATTAT
TTTATGAAAATATTGAAAAAAAACAATAATAATTATAATTATTTATAATTAAATCTATAT
ATATTTATTGATAAAAAAAAAACCANTAAAAAAAAAAXXXXXXXXXXTGGATTTCAGATT
TAACAATGGATGGTGAAGATATGATAATTTCAATTCGTGATCGTGGTGGTGATTTAGATC
GTGATGTTGGTACCTATGATATGTTAAGAGCTTGCTTTGATGGTGATCAATTAATACTTG
AGAATAGTGGAATTTGTGGAGGTGTTCCTGGTGCTCATCTATTACCTTCTGGTTATTTCG
GTACACCTGACGGTATCAATAGTGGTGAATATTACAATGATAATTTCTATTATCCAACTG
ATAATGATGGTCATGATAATGTAGCTTCGACTTCTGGTGTTGTAATTCCAGGTTATCATA
CTCTCTTTGGTTCTTCATTAGATATCGATAGTGTTGGACAAGGTACTGTTAAAGTTTGGG
ATAATAAAAATGGTCTATTACTATATGGTATTGGTGTTTATCTTCAAAGTAATGAAAATC
CAACAAATAATTTTGGTAAAGCAAATGGTTTAGGTGATATGGAACCAATTTGTTATAATT
ATATTAAATAATTAATAAAAAAAAATAAATAAATAAAACAAAATAAATATAAAAAAATAA
ATAAATATAAAAATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
iyifqy*inhpnnsiptlyyfmkilkknnnnynyl*LNLYIFIDKKKTXKKK---

---WISDLTMDGEDMIISIRDRGGDLDRDVGTYDMLRACFDGDQLILENSGICGGVPGAH
LLPSGYFGTPDGINSGEYYNDNFYYPTDNDGHDNVASTSGVVIPGYHTLFGSSLDIDSVG
QGTVKVWDNKNGLLLYGIGVYLQSNENPTNNFGKANGLGDMEPICYNYIK*likknk*ik
qnkykkinkyknk
Translated Amino Acid sequence (All Frames) 
Frame A:
iyifqy*inhpnnsiptlyyfmkilkknnnnynyl*LNLYIFIDKKKTXKKK---

---WISDLTMDGEDMIISIRDRGGDLDRDVGTYDMLRACFDGDQLILENSGICGGVPGAH
LLPSGYFGTPDGINSGEYYNDNFYYPTDNDGHDNVASTSGVVIPGYHTLFGSSLDIDSVG
QGTVKVWDNKNGLLLYGIGVYLQSNENPTNNFGKANGLGDMEPICYNYIK*likknk*ik
qnkykkinkyknk

Frame B:
fiffntkliiliiqyqlyiil*ky*kktiiiiiiyn*iyiyllikkkpxkkk---

---gfqi*qwmvki**fqfvivvvi*ivmlvpmic*elalmvin*ylrivefvevflvli
yyllvisvhltvsivvnitmiisiiqlimmvmim*lrllvl*fqviilslvlh*isivld
kvllkfgiikmvyyymvlvfifkvmkiqqiilvkqmv*viwnqfviiilnn**kkink*n
kinikk*inikin

Frame C:
lyfsiln*ss**fntnfilfyeniekkq**l*lfiiksiyiy**kknx*kk---

---dfrfnngw*rydnfns*sww*frs*cwyl*yvksll*w*sint*e*wnlwrcswcss
itfwlfryt*ryq*w*ilq**fllsn***ws**csfdfwccnsrlsyslwffiryr*cwt
ryc*slg**kwsitiwywclssk**ksnk*fw*skwfr*ygtnll*ly*iinkkk*inkt
k*i*knk*i*k*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH195 (SHH195Q) /CSM/SH/SHH1-D/SHH195Q.Seq.d/                        985   0.0
AHL377 (AHL377Q) /CSM/AH/AHL3-D/AHL377Q.Seq.d/                        985   0.0
AHE155 (AHE155Q) /CSM/AH/AHE1-C/AHE155Q.Seq.d/                        985   0.0
AHA605 (AHA605Q) /CSM/AH/AHA6-A/AHA605Q.Seq.d/                        985   0.0
SHH169 (SHH169Q) /CSM/SH/SHH1-C/SHH169Q.Seq.d/                        983   0.0
SHL290 (SHL290Q) /CSM/SH/SHL2-D/SHL290Q.Seq.d/                        965   0.0
AHO144 (AHO144Q) /CSM/AH/AHO1-B/AHO144Q.Seq.d/                        739   0.0
AHA146 (AHA146Q) /CSM/AH/AHA1-B/AHA146Q.Seq.d/                        706   0.0
AHN159 (AHN159Q) /CSM/AH/AHN1-C/AHN159Q.Seq.d/                        696   0.0
AHA618 (AHA618Q) /CSM/AH/AHA6-A/AHA618Q.Seq.d/                        680   0.0
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX392737|AX392737.1 Sequence 27 from Patent WO0212526.             40   9e-04  4
AR707084|AR707084.1 Sequence 27 from patent US 6933145.            40   9e-04  4
BX571668|BX571668.20 Zebrafish DNA sequence from clone DKEY-47M8 in linkage group 10.    36   0.003  2
CT025903|CT025903.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-66H5.    42   0.003  2
AC092129|AC092129.3 Homo sapiens chromosome 16 clone RP11-140O8, complete sequence.    42   0.012  2
AC092125|AC092125.2 Homo sapiens chromosome 16 clone RP11-109D24, complete sequence.    42   0.012  2
BX950864|BX950864.17 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-158B13.    52   0.018  1
Z97348|Z97348.1 Plasmodium falciparum MAL3P1.                      36   0.024  6
BX324198|BX324198.20 Zebrafish DNA sequence from clone CH211-108M2 in linkage group 7.    36   0.029  4
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    34   0.051  9
dna update 2006. 4. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF009521_1(AF009521|pid:none) Mus spretus sex determining protei...    45   0.002
(Q62563) RecName: Full=Sex-determining region Y protein; AltName...    45   0.002
AY056469_1(AY056469|pid:none) Petromyzon marinus homeobox protei...    44   0.005
U70651_1(U70651|pid:none) Mus musculus musculus sex determining ...    44   0.006
AC117075_53(AC117075|pid:none) Dictyostelium discoideum chromoso...    44   0.006
(P04929) Histidine-rich glycoprotein precursor.  &KGZQHL(A22692)...    42   0.014
U70652_1(U70652|pid:none) Mus musculus musculus sex determining ...    42   0.025
AE014297_2522(AE014297|pid:none) Drosophila melanogaster chromos...    41   0.042
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.094
Z98547_1(Z98547|pid:none) Plasmodium falciparum MAL3P3, complete...    39   0.12
protein update 2009. 4.19
PSORT 

 psg: 0.55  gvh: 0.24  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHH195 is nuc
5' end seq. ID SHH195F
5' end seq. 
>SHH195F.Seq
ATTTATATTTTTCAATACTAAATTAATCATCCTAATAATTCAATACCAACTTTATATTAT
TTTATGAAAATATTGAAAAAAAACAATAATAATTATAATTATTTATAATTAAATCTATAT
ATATTTATTGATAAAAAAAAAACCANTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 167
3' end seq. ID SHH195Z
3' end seq. 
>SHH195Z.Seq
NNNNNNNNNNTGGATTTCAGATTTAACAATGGATGGTGAAGATATGATAATTTCAATTCG
TGATCGTGGTGGTGATTTAGATCGTGATGTTGGTACCTATGATATGTTAAGAGCTTGCTT
TGATGGTGATCAATTAATACTTGAGAATAGTGGAATTTGTGGAGGTGTTCCTGGTGCTCA
TCTATTACCTTCTGGTTATTTCGGTACACCTGACGGTATCAATAGTGGTGAATATTACAA
TGATAATTTCTATTATCCAACTGATAATGATGGTCATGATAATGTAGCTTCGACTTCTGG
TGTTGTAATTCCAGGTTATCATACTCTCTTTGGTTCTTCATTAGATATCGATAGTGTTGG
ACAAGGTACTGTTAAAGTTTGGGATAATAAAAATGGTCTATTACTATATGGTATTGGTGT
TTATCTTCAAAGTAATGAAAATCCAACAAATAATTTTGGTAAAGCAAATGGTTTAGGTGA
TATGGAACCAATTTGTTATAATTATATTAAATAATTAATAAAAAAAAATAAATAAATAAA
ACAAAATAAATATAAAAAAATAAATAAATATAAAAATAAAT
Length of 3' end seq. 581
Connected seq. ID SHH195P
Connected seq. 
>SHH195P.Seq
ATTTATATTTTTCAATACTAAATTAATCATCCTAATAATTCAATACCAACTTTATATTAT
TTTATGAAAATATTGAAAAAAAACAATAATAATTATAATTATTTATAATTAAATCTATAT
ATATTTATTGATAAAAAAAAAACCANTAAAAAAAAAA----------TGGATTTCAGATT
TAACAATGGATGGTGAAGATATGATAATTTCAATTCGTGATCGTGGTGGTGATTTAGATC
GTGATGTTGGTACCTATGATATGTTAAGAGCTTGCTTTGATGGTGATCAATTAATACTTG
AGAATAGTGGAATTTGTGGAGGTGTTCCTGGTGCTCATCTATTACCTTCTGGTTATTTCG
GTACACCTGACGGTATCAATAGTGGTGAATATTACAATGATAATTTCTATTATCCAACTG
ATAATGATGGTCATGATAATGTAGCTTCGACTTCTGGTGTTGTAATTCCAGGTTATCATA
CTCTCTTTGGTTCTTCATTAGATATCGATAGTGTTGGACAAGGTACTGTTAAAGTTTGGG
ATAATAAAAATGGTCTATTACTATATGGTATTGGTGTTTATCTTCAAAGTAATGAAAATC
CAACAAATAATTTTGGTAAAGCAAATGGTTTAGGTGATATGGAACCAATTTGTTATAATT
ATATTAAATAATTAATAAAAAAAAATAAATAAATAAAACAAAATAAATATAAAAAAATAA
ATAAATATAAAAATAAAT
Length of connected seq. 728
Full length Seq ID -
Full length Seq. -
Length of full length seq. -