>SHH179 (SHH179Q) /CSM/SH/SHH1-D/SHH179Q.Seq.d/
XXXXXXXXXXANTATCAGANNGGATTAAATNTGGAAAATGGTCGTTGTATGATAGACCAA
AGTTATCATATGATATNNTATCACNTTNGGATAGTCATTTATGGNTAAAGAAACCCTTGA
CCATTTCACCTCAATTCTTAACTATGATTGGTCCTNAATTGGACCCAACTTNACCAAATA
ATCCATTCAAAGAATTCTTTAATAAACTTGGAACTTCAAGTCATGATAGTGGTGATAATA
TCGATTNTAAAATACCTTCATTCTTTGAAGATAATTCACGTAGACATTGGGGTGTAGAAA
CTGAATTATCAACTGGTTCTTGTCCAAT

---XSXXIKXGKWSLYDRPKLSYDXXSXXDSHLWXKKPLTISPQFLTMIGPXLDPTXPNN
PFKEFFNKLGTSSHDSGDNIDXKIPSFFEDNSRRHWGVETELSTGSCP

Frame A:
---XSXXIKXGKWSLYDRPKLSYDXXSXXDSHLWXKKPLTISPQFLTMIGPXLDPTXPNN
PFKEFFNKLGTSSHDSGDNIDXKIPSFFEDNSRRHWGVETELSTGSCP


Frame B:
---yqxglnxengrcmidqsyhmixyhxxiviyg*rnp*pfhlns*l*lvlnwtqlxqii
hsknslinlelqvmivviisixkylhslkiihvdigv*klnyqlvlvq


Frame C:
---irxd*xwkmvvv**tkvii*yxitxg*sfmxketldhftsilnydwsxigpnxtk*s
iqril**twnfks**w**yrx*ntfil*r*ft*tlgcrn*iinwflsn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE776 (VFE776Q) /CSM/VF/VFE7-D/VFE776Q.Seq.d/                        561   e-159
SLG280 (SLG280Q) /CSM/SL/SLG2-D/SLG280Q.Seq.d/                        561   e-159
SHK834 (SHK834Q) /CSM/SH/SHK8-B/SHK834Q.Seq.d/                        561   e-159
SHH179 (SHH179Q) /CSM/SH/SHH1-D/SHH179Q.Seq.d/                        561   e-159
CHS203 (CHS203Q) /CSM/CH/CHS2-A/CHS203Q.Seq.d/                        561   e-159
CHQ609 (CHQ609Q) /CSM/CH/CHQ6-A/CHQ609Q.Seq.d/                        561   e-159
CHN655 (CHN655Q) /CSM/CH/CHN6-C/CHN655Q.Seq.d/                        561   e-159
CHG701 (CHG701Q) /CSM/CH/CHG7-A/CHG701Q.Seq.d/                        561   e-159
AHI664 (AHI664Q) /CSM/AH/AHI6-C/AHI664Q.Seq.d/                        561   e-159
AHF529 (AHF529Q) /CSM/AH/AHF5-B/AHF529Q.Seq.d/                        561   e-159

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   561   e-156  1
BG591272|BG591272.1 EST499114 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8G23 5' sequence, mRNA sequence.    44   1.9    1
CT030635|CT030635.8 Mouse DNA sequence from clone RP23-94N7 on chromosome 9.    44   1.9    1
AC160992|AC160992.2 Mus musculus BAC clone RP23-147I23 from chromosome 9, complete sequence.    44   1.9    1
AL929066|AL929066.7 Mouse DNA sequence from clone RP23-68E1 on chromosome 2.    32   6.6    4
BW572424|BW572424.1 Ciona savignyi cDNA, clone:csef009l24, 5'end, single read.    42   7.6    1
AC183074|AC183074.1 Bos taurus clone CH240-75J22, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces.    42   7.6    1
AC079351|AC079351.3 Homo sapiens chromosome 7 clone RP11-828B13, WORKING DRAFT SEQUENCE, 12 unordered pieces.    42   7.6    1
AC068632|AC068632.10 Homo sapiens chromosome 3 clone RP11-804O8, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.    42   7.6    1
BV032591|BV032591.1 S212P60526FD7.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   7.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000589_44(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...    38   0.12
U55854_11(U55854|pid:none) Caenorhabditis elegans cosmid C04G6, ...    36   0.35
U55854_12(U55854|pid:none) Caenorhabditis elegans cosmid C04G6, ...    36   0.35
T29599(T29599)hypothetical protein C04G6.1 - Caenorhabditis eleg...    36   0.35
AJ833642_1(AJ833642|pid:none) Coffea canephora partial mRNA for ...    35   0.77
AY426251_1(AY426251|pid:none) Tetrahymena thermophila strain B p...    35   1.0
EF156759_1(EF156759|pid:none) Catharanthus roseus putative MAPK2...    34   1.7
EU780426_90(EU780426|pid:none) Spodoptera litura nucleopolyhedro...    34   1.7
AF539999_108(AF539999|pid:none) Mamestra configurata nucleopolyh...    34   1.7
(Q40517) RecName: Full=Mitogen-activated protein kinase homolog ...    33   2.2

 psg: 0.49  gvh: 0.49  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for SHH179 is cyt

>SHH179Z.Seq
NNNNNNNNNNANTATCAGANNGGATTAAATNTGGAAAATGGTCGTTGTATGATAGACCAA
AGTTATCATATGATATNNTATCACNTTNGGATAGTCATTTATGGNTAAAGAAACCCTTGA
CCATTTCACCTCAATTCTTAACTATGATTGGTCCTNAATTGGACCCAACTTNACCAAATA
ATCCATTCAAAGAATTCTTTAATAAACTTGGAACTTCAAGTCATGATAGTGGTGATAATA
TCGATTNTAAAATACCTTCATTCTTTGAAGATAATTCACGTAGACATTGGGGTGTAGAAA
CTGAATTATCAACTGGTTCTTGTCCAAT