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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH172
Library SH
(Link to library)
Clone ID SHH172
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12327-1
Original site URL
Representative seq. ID SHH172P
(Link to Original site)
Representative DNA sequence 
>SHH172 (SHH172Q) /CSM/SH/SHH1-C/SHH172Q.Seq.d/
AATGAATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGA
GTTTCTTCAACAAATCGTTCACCATTTTTAGAGTTTCTTTCACATCCATCAATTTTACTT
TTAAATCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTA
GAAGCTGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAG
ATTGTTATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTA
GTTAGACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAA
CCAAATTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGT
TTAGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCAAGATTTTTCT
TTCATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATTCTCAAAGTTC
ACTTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTTTGATCAAGTT
GTATXXXXXXXXXXAAGAAATTGAAATTCTATGAATCTATCACTTGGTCATTCTCTATTC
ATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCATTCCTTATCAA
TGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAACTTCATCAAAT
TCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGATGAAAGAAAGA
TTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACTTTCATTGAAAT
TAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACTTCAAGATAGAT
TTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTTCAATTCCAAAAT
TAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGTAATTTCTTCTT
CTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGATAAAAAGAAACTGAAAA
AGAAGAAAAACAAAGAGAAAAAGAAAGAAAACAAAAAGAAAAAGNAAGATAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
NESEVKDEKSMRNRQVEKRRVSSTNRSPFLEFLSHPSILLLNLEPSSTDGIVNIDLSQLV
EAGSTIHIHAVDNDSIFTKEIVISDPSSSSSINHFKDTKLVRPLDSSLHYKEEKLITTVE
PNSPFEILNVNSSKYTVYDSLDKVLSLMKTLNKSYLQDFSFIAEWESLSFEKKKEKFSKF
TCHELNFFIYKKDKEFFDQVV---

---KKLKFYESITWSFSIHHKNFVYLKDYLSEQIHSLSMKSIDAPSIYVDPFENNFIKFL
EYSPLVNSRTHQIGDERKILNNKLSNQYYEFCSLLSLKLNPSDTELLSLAYYLLLQDRFD
ESIKIMKRIGKHPVSIPKLISSSTTTDSKSTHSSVISSSSSSNLSTTTDSSKDKKKLKKK
KNKEKKKENKKKKXDK
Translated Amino Acid sequence (All Frames) 
Frame A:
NESEVKDEKSMRNRQVEKRRVSSTNRSPFLEFLSHPSILLLNLEPSSTDGIVNIDLSQLV
EAGSTIHIHAVDNDSIFTKEIVISDPSSSSSINHFKDTKLVRPLDSSLHYKEEKLITTVE
PNSPFEILNVNSSKYTVYDSLDKVLSLMKTLNKSYLQDFSFIAEWESLSFEKKKEKFSKF
TCHELNFFIYKKDKEFFDQVV---

---KKLKFYESITWSFSIHHKNFVYLKDYLSEQIHSLSMKSIDAPSIYVDPFENNFIKFL
EYSPLVNSRTHQIGDERKILNNKLSNQYYEFCSLLSLKLNPSDTELLSLAYYLLLQDRFD
ESIKIMKRIGKHPVSIPKLISSSTTTDSKSTHSSVISSSSSSNLSTTTDSSKDKKKLKKK
KNKEKKKENKKKKXDK

Frame B:
mnlk*rmknq*eidklkreeflqqivhhf*sffhihqfyf*ilnhhqlmv**ilisln**
klvqqfismplimilslqkrllflihhhhhrliiskiln*ldhwihlyiikkrn*lqlln
qihhlks*m*tlqniqytiv*ikfyl**kl*irvifkiflslqngnhyhlkrrkrnsqss
lamn*tfssikrirnslikly---

---rn*nsmnlslghslfiirisft*kitslnkfipyq*nqsmhhpfmlihlkitssnsw
ntlhwliqeliklvmkerfliinyqinimnsvvyfh*n*ihpilnyfl*liiyyfkidlm
nqlkl*relvniqfqfqn*fllqplliqnqlihq*flllplqiyqpllivqkikrn*krr
ktkrkrkktkrkxkik

Frame C:
*i*skg*kinek*ts*keksffnksftifrvsftsinftfks*tiin*wysky*slsisr
swfnnsypcr***fylykrdcyf*siiiiid*sfqry*is*tigfiftl*rreinync*t
kfti*nlkcklfkiysir*fr*sfifnenfe*elssrfffhcrmgiiii*keereilkvh
lp*iklfhl*kg*gil*ssc---

---eieil*iyhlvilyss*efrllerlpl*tnsflineinrctihlc*si*k*lhqilg
ilsig*fknssnw**kkds***iiksil*il*ftfieiksiry*itffsllfitsr*i**
in*nyeenw*tssfnskinfffnhy*fkinsfisnfffflfkfinhy**fkr*ketekee
kqrekerkqkekxr*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH172 (SHH172Q) /CSM/SH/SHH1-C/SHH172Q.Seq.d/                       2155   0.0
SHH103 (SHH103Q) /CSM/SH/SHH1-A/SHH103Q.Seq.d/                       1142   0.0
VHP670 (VHP670Q) /CSM/VH/VHP6-C/VHP670Q.Seq.d/                        997   0.0
VHP284 (VHP284Q) /CSM/VH/VHP2-D/VHP284Q.Seq.d/                        997   0.0
VHN858 (VHN858Q) /CSM/VH/VHN8-C/VHN858Q.Seq.d/                        997   0.0
VHN485 (VHN485Q) /CSM/VH/VHN4-D/VHN485Q.Seq.d/                        997   0.0
VHD728 (VHD728Q) /CSM/VH/VHD7-B/VHD728Q.Seq.d/                        997   0.0
VHC649 (VHC649Q) /CSM/VH/VHC6-C/VHC649Q.Seq.d/                        997   0.0
VHC626 (VHC626Q) /CSM/VH/VHC6-B/VHC626Q.Seq.d/                        997   0.0
VHB392 (VHB392Q) /CSM/VH/VHB3-D/VHB392Q.Seq.d/                        997   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC095286|AC095286.5 Rattus norvegicus clone CH230-12C16, WORKING DRAFT SEQUENCE.    36   0.001  8
AC127716|AC127716.3 Rattus norvegicus clone CH230-21L7, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   0.003  8
BG226304|BG226304.1 kq20a02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5', mRNA sequence.    44   0.007  2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   0.011  10
AC160909|AC160909.2 Rhinolophus ferrumequinum clone VMRC7-105B9, WORKING DRAFT SEQUENCE, 5 ordered pieces.    38   0.017  8
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.    38   0.022  7
AI977353|AI977353.1 EST271947 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAI29 5' end, mRNA sequence.    46   0.027  2
DW014230|DW014230.1 w7l15_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w7l15_M13F, mRNA sequence.    52   0.030  1
DW013855|DW013855.1 w6j1_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w6j1_M13F, mRNA sequence.    52   0.030  1
DW013658|DW013658.1 w6a21_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w6a21_M13F, mRNA sequence.    52   0.030  1
dna update 2006. 4. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY740026_3(AY740026|pid:none) Saccharomyces kudriavzevii IFO 180...    35   5.0
CP000061_184(CP000061|pid:none) Aster yellows witches'-broom phy...    34   8.5
protein update 2008.11.18
PSORT 

 psg: 0.75  gvh: 0.65  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.42  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHH172 is nuc
5' end seq. ID SHH172F
5' end seq. 
>SHH172F.Seq
AATGAATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGA
GTTTCTTCAACAAATCGTTCACCATTTTTAGAGTTTCTTTCACATCCATCAATTTTACTT
TTAAATCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTA
GAAGCTGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAG
ATTGTTATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTA
GTTAGACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAA
CCAAATTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGT
TTAGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCAAGATTTTTCT
TTCATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATTCTCAAAGTTC
ACTTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTTTGATCAAGTT
GTATNNNNNNNNNN
Length of 5' end seq. 614
3' end seq. ID SHH172Z
3' end seq. 
>SHH172Z.Seq
NNNNNNNNNNAAGAAATTGAAATTCTATGAATCTATCACTTGGTCATTCTCTATTCATCA
TAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCATTCCTTATCAATGAA
ATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAACTTCATCAAATTCTT
GGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGATGAAAGAAAGATTCT
TAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACTTTCATTGAAATTAAA
TCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACTTCAAGATAGATTTGA
TGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTTCAATTCCAAAATTAAT
TTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGTAATTTCTTCTTCTTC
CTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGATAAAAAGAAACTGAAAAAGAA
GAAAAACAAAGAGAAAAAGAAAGAAAACAAAAAGAAAAAGNAAGATAAAAA
Length of 3' end seq. 591
Connected seq. ID SHH172P
Connected seq. 
>SHH172P.Seq
AATGAATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGA
GTTTCTTCAACAAATCGTTCACCATTTTTAGAGTTTCTTTCACATCCATCAATTTTACTT
TTAAATCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTA
GAAGCTGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAG
ATTGTTATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTA
GTTAGACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAA
CCAAATTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGT
TTAGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCAAGATTTTTCT
TTCATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATTCTCAAAGTTC
ACTTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTTTGATCAAGTT
GTAT----------AAGAAATTGAAATTCTATGAATCTATCACTTGGTCATTCTCTATTC
ATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCATTCCTTATCAA
TGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAACTTCATCAAAT
TCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGATGAAAGAAAGA
TTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACTTTCATTGAAAT
TAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACTTCAAGATAGAT
TTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTTCAATTCCAAAAT
TAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGTAATTTCTTCTT
CTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGATAAAAAGAAACTGAAAA
AGAAGAAAAACAAAGAGAAAAAGAAAGAAAACAAAAAGAAAAAGNAAGATAAAAA
Length of connected seq. 1185
Full length Seq ID -
Full length Seq. -
Length of full length seq. -