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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH165
Library SH
(Link to library)
Clone ID SHH165
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHH165P
(Link to Original site)
Representative DNA sequence 
>SHH165 (SHH165Q) /CSM/SH/SHH1-C/SHH165Q.Seq.d/
AGATTATTATTTTTTTCATCAATAAATTAATATTTCTTTGTATTTCTTTTTATATTATTC
ATTAAAAAAAAAAAAANTAAAAAAAAAANCAAANTAAAAAAAAAANTAAANTNTTAAANC
AANTTAAAAAAAANGGGNAAAAAAAAAXXXXXXXXXXGTTNTTTATTAGTTCCNCCNCCA
TTTGGTTCACCAAATGATATCAATGCTATTTCAATTGAAANATTATCNCCTTTAACTTTT
GTTAAACAAACTTTTGNTTTTCCATTATNTGTTATNTCTGGTGGTGATAAAACCAACAAC
NCTTTAAAACCAAAACAAACTACAAAAGGT
sequence update 2002.10.25
Translated Amino Acid sequence 
iiiffinkliflcisfyiih*kkkx*KKXQXKKKXKXLXQXKKXGXKK---

---XLLVPPPFGSPNDINAISIEXLSPLTFVKQTFXFPLXVXSGGDKTNNXLKPKQTTKG
Translated Amino Acid sequence (All Frames) 
Frame A:
rllffssin*yffvflfilfikkkkxkkkxkxkkkxxx*xxlkkxgkkk---

---vxy*fxxhlvhqmismlfqlkxyxl*lllnkllxfhyxlxlvvikpttl*nqnklqk

Frame B:
dyyffhq*inislyfflyyslkkkkxkkkxx*kkx*xxkxx*kkxxkk---

---xfissxxiwftk*yqcyfn*xiixfnfc*tnfxfsixcyxww**nqqxfktktnykr

Frame C:
iiiffinkliflcisfyiih*kkkx*KKXQXKKKXKXLXQXKKXGXKK---

---XLLVPPPFGSPNDINAISIEXLSPLTFVKQTFXFPLXVXSGGDKTNNXLKPKQTTKG
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH165 (SHH165Q) /CSM/SH/SHH1-C/SHH165Q.Seq.d/                        289   1e-77
SHC694 (SHC694Q) /CSM/SH/SHC6-D/SHC694Q.Seq.d/                        278   5e-74
SHC174 (SHC174Q) /CSM/SH/SHC1-D/SHC174Q.Seq.d/                        278   5e-74
AHJ371 (AHJ371Q) /CSM/AH/AHJ3-C/AHJ371Q.Seq.d/                        278   5e-74
AHI309 (AHI309Q) /CSM/AH/AHI3-A/AHI309Q.Seq.d/                        278   5e-74
AHG634 (AHG634Q) /CSM/AH/AHG6-B/AHG634Q.Seq.d/                        278   5e-74
SHG889 (SHG889Q) /CSM/SH/SHG8-D/SHG889Q.Seq.d/                        274   8e-73
SHK424 (SHK424Q) /CSM/SH/SHK4-A/SHK424Q.Seq.d/                        272   3e-72
SHA827 (SHA827Q) /CSM/SH/SHA8-B/SHA827Q.Seq.d/                        272   3e-72
AHO656 (AHO656Q) /CSM/AH/AHO6-C/AHO656Q.Seq.d/                        272   3e-72
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.   258   1e-84  2
BX005004|BX005004.12 Zebrafish DNA sequence from clone DKEY-11L18.    50   0.031  1
AP005431|AP005431.3 Homo sapiens genomic DNA, chromosome 18 clone:RP11-193E15, complete sequence.    48   0.12   1
CC243577|CC243577.1 CH261-84N3_Sp6.1 CH261 Gallus gallus genomic clone CH261-84N3, DNA sequence.    46   0.49   1
AC180823|AC180823.1 Strongylocentrotus purpuratus clone R3-3071C20, WORKING DRAFT SEQUENCE, 11 unordered pieces.    38   0.65   2
AC162474|AC162474.2 Bos taurus clone CH240-119N8, *** SEQUENCING IN PROGRESS ***, 57 unordered pieces.    32   0.95   2
AC092644|AC092644.3 Homo sapiens BAC clone RP11-394A2 from 2, complete sequence.    36   1.3    4
AC159463|AC159463.1 Pan troglodytes BAC clone CH251-413O15 from chromosome unknown, complete sequence.    44   1.6    3
DN332776|DN332776.1 LIB3184-035-P2-K2-F10 LIB3184 Canis familiaris cDNA clone CLN1566126, mRNA sequence.    44   1.9    1
AU090896|AU090896.1 Paralichthys olivaceus cDNA forward end of clone:JFConA390F.    44   1.9    1
dna update 2006. 4. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT050902_1(BT050902|pid:none) Medicago truncatula clone MTYF9_FA...    33   2.2
BT050875_1(BT050875|pid:none) Medicago truncatula clone MTYF9_FA...    33   2.9
AY812022_1(AY812022|pid:none) Schistosoma japonicum clone SJCHGC...    33   2.9
BT050794_1(BT050794|pid:none) Medicago truncatula clone MTYF5_F6...    32   6.4
BT051012_1(BT051012|pid:none) Medicago truncatula clone MTYFD_FE...    32   6.4
BT050940_1(BT050940|pid:none) Medicago truncatula clone MTYFD_FE...    32   6.4
BT050752_1(BT050752|pid:none) Medicago truncatula clone MTYF5_F6...    32   6.4
BT051163_1(BT051163|pid:none) Medicago truncatula clone MTYFT1G-...    32   6.4
BT050896_1(BT050896|pid:none) Medicago truncatula clone MTYF9_FA...    32   6.4
BT050816_1(BT050816|pid:none) Medicago truncatula clone MTYF5_F6...    32   6.4
protein update 2009. 4.19
PSORT 

 psg: 0.56  gvh: 0.59  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SHH165 is cyt
5' end seq. ID SHH165F
5' end seq. 
>SHH165F.Seq
AGATTATTATTTTTTTCATCAATAAATTAATATTTCTTTGTATTTCTTTTTATATTATTC
ATTAAAAAAAAAAAAANTAAAAAAAAAANCAAANTAAAAAAAAAANTAAANTNTTAAANC
AANTTAAAAAAAANGGGNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 157
3' end seq. ID SHH165Z
3' end seq. 
>SHH165Z.Seq
NNNNNNNNNNGTTNTTTATTAGTTCCNCCNCCATTTGGTTCACCAAATGATATCAATGCT
ATTTCAATTGAAANATTATCNCCTTTAACTTTTGTTAAACAAACTTTTGNTTTTCCATTA
TNTGTTATNTCTGGTGGTGATAAAACCAACAACNCTTTAAAACCAAAACAAACTACAAAA
GGT
Length of 3' end seq. 183
Connected seq. ID SHH165P
Connected seq. 
>SHH165P.Seq
AGATTATTATTTTTTTCATCAATAAATTAATATTTCTTTGTATTTCTTTTTATATTATTC
ATTAAAAAAAAAAAAANTAAAAAAAAAANCAAANTAAAAAAAAAANTAAANTNTTAAANC
AANTTAAAAAAAANGGGNAAAAAAAAA----------GTTNTTTATTAGTTCCNCCNCCA
TTTGGTTCACCAAATGATATCAATGCTATTTCAATTGAAANATTATCNCCTTTAACTTTT
GTTAAACAAACTTTTGNTTTTCCATTATNTGTTATNTCTGGTGGTGATAAAACCAACAAC
NCTTTAAAACCAAAACAAACTACAAAAGGT
Length of connected seq. 320
Full length Seq ID -
Full length Seq. -
Length of full length seq. -