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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH164
Library SH
(Link to library)
Clone ID SHH164
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHH164P
(Link to Original site)
Representative DNA sequence 
>SHH164 (SHH164Q) /CSM/SH/SHH1-C/SHH164Q.Seq.d/
AAATTTTAATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATT
AATATTAATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAAT
ACTGTATTAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAA
TGTTATTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAAT
GTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTAT
TCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTT
ACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCA
CCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTA
GTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGC
TCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACC
ACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCCXXXXXXXXXXAA
TCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGA
TATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTA
TAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGG
TCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTA
TGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGG
TATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCA
ACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGT
TGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTC
CATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATC
AACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTT
TAATGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAATAAAA
AAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*ken
vi*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnl
hlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*LNKLVFHQA
HLYLQLELVLIWGYVEQTQPPTQPPTQPPTQPPTP---

---NHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYIT
SSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFL
IYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSD
AFLSTVDNVYVTSFTSSDAGGYYFNGCSLVLFQKNKIIKKYK*k
Translated Amino Acid sequence (All Frames) 
Frame A:
kf*llyiiflniyiniy*yininkmkilyslllissiilntvlnissqvydqrilalkgk
cyldsnknalydegepgfgnveislgnatdykgnkypiryssadgtfiydgltqrttyef
tftnpkdyyfetyektlacppgvpcirptvsadnlaadllvantfayniplikqvgvssg
ssiltvrisvdlglc*ansttnsttysttysttnts---

---NHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYIT
SSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFL
IYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSD
AFLSTVDNVYVTSFTSSDAGGYYFNGCSLVLFQKNKIIKKYK*k

Frame B:
nfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*ken
vi*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnl
hlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*LNKLVFHQA
HLYLQLELVLIWGYVEQTQPPTQPPTQPPTQPPTP---

---iikqvfmtipmllvqlkvvvilllqlvsitmkhlkvqfvgimqplvnn*kvtlyi*p
lqmvvphlqplvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlvfqesqys*
smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplq*emliqliqiqivm
lsyqllimfmsllllllmlvviilmvvhwyyskkik**kninkk

Frame C:
iliivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkm
lfrfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iy
iyqskrlll*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirl
iytys*n*c*fgvmlsklnhqlnhllnhllnhqhl---

---s*nrss*lyqcfwcn*rws*yycynwfrll*si*rfnslv*cnlw*ttkrllfiynl
fkwsypisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*twyfrnhsiln
lwstinsnksncirfkwlfqi*s*fqfklllcnsccilpswffhynekc*snsskyk**c
flinc**clchffyff*cwwllf*wlfigiipkk*nnkki*ikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL873 (SHL873Q) /CSM/SH/SHL8-D/SHL873Q.Seq.d/                       1245   0.0
SHL749 (SHL749Q) /CSM/SH/SHL7-C/SHL749Q.Seq.d/                       1245   0.0
SHL724 (SHL724Q) /CSM/SH/SHL7-A/SHL724Q.Seq.d/                       1245   0.0
SHL693 (SHL693Q) /CSM/SH/SHL6-D/SHL693Q.Seq.d/                       1245   0.0
SHL487 (SHL487Q) /CSM/SH/SHL4-D/SHL487Q.Seq.d/                       1245   0.0
SHL441 (SHL441Q) /CSM/SH/SHL4-B/SHL441Q.Seq.d/                       1245   0.0
SHL440 (SHL440Q) /CSM/SH/SHL4-B/SHL440Q.Seq.d/                       1245   0.0
SHL417 (SHL417Q) /CSM/SH/SHL4-A/SHL417Q.Seq.d/                       1245   0.0
SHL266 (SHL266Q) /CSM/SH/SHL2-C/SHL266Q.Seq.d/                       1245   0.0
SHL232 (SHL232Q) /CSM/SH/SHL2-B/SHL232Q.Seq.d/                       1245   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF066073|AF066073.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds.    62   3e-05  1
AF066071|AF066071.1 Dictyostelium discoideum SP85 (pspB) gene, complete cds.    62   3e-05  1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    62   3e-05  1
CK808839|CK808839.1 Rasgsc1686 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    34   4e-05  3
CK808739|CK808739.1 Rasgsc1529 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    32   5e-04  3
S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt].    58   5e-04  1
AF066072|AF066072.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds.    58   5e-04  1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    58   5e-04  1
CK808037|CK808037.1 Rasgsc0316 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    34   0.002  3
DT775356|DT775356.1 124719991 TH1 Tribolium castaneum cDNA clone 3C7 3', mRNA sequence.    54   0.008  1
dna update 2006. 4. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   2e-08
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    61   7e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    59   4e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   4e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   3e-05
protein update 2009. 4.19
PSORT 

 psg: 0.79  gvh: 0.51  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SHH164 is nuc
5' end seq. ID SHH164F
5' end seq. 
>SHH164F.Seq
AAATTTTAATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATT
AATATTAATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAAT
ACTGTATTAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAA
TGTTATTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAAT
GTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTAT
TCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTT
ACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCA
CCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTA
GTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGC
TCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACC
ACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCCNNNNNNNNNN
Length of 5' end seq. 658
3' end seq. ID SHH164Z
3' end seq. 
>SHH164Z.Seq
NNNNNNNNNNAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAA
AGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTC
AATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAAC
CTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATAT
TACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATAT
AAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTT
AATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTT
CAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCA
AGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGA
TGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGG
TGGTTATTATTTTAATGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATAAAAAA
ATATAAATAAAAAAA
Length of 3' end seq. 675
Connected seq. ID SHH164P
Connected seq. 
>SHH164P.Seq
AAATTTTAATTATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATT
AATATTAATAAAATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAAT
ACTGTATTAAATATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAA
TGTTATTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAAT
GTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTAT
TCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTT
ACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCA
CCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTA
GTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGC
TCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACC
ACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCC----------AA
TCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGA
TATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTA
TAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGG
TCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTA
TGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGG
TATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCA
ACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGT
TGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTC
CATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATC
AACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTT
TAATGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAATAAAA
AAA
Length of connected seq. 1313
Full length Seq ID -
Full length Seq. -
Length of full length seq. -