>SHH162 (SHH162Q) /CSM/SH/SHH1-C/SHH162Q.Seq.d/
XXXXXXXXXXTNGTAAAGGTATTGTTATTGGTGAANAANGTTGNATCGGTTNCCCATTAT
TTTNTGTCAAAGNTCATTTACCAGTATTANAATCCTTNGGTTTNNCCGNTGATTTACGTT
NCCNCACTGCCGGTCAAG

---XKGIVIGEXXXIGXPLFXVKXHLPVLXSXGXXXDLRXXTAGQ

Frame A:
---XKGIVIGEXXXIGXPLFXVKXHLPVLXSXGXXXDLRXXTAGQ


Frame B:
---vkvlllvxxvxsvxhyfxskxiyqyxnpxvxpxiyvxxlpvk


Frame C:
---*rycyw*xxlxrxpiixcqxsftsixilxfxr*ftxphcrs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP845 (VHP845Q) /CSM/VH/VHP8-B/VHP845Q.Seq.d/                        172   8e-43
VHO348 (VHO348Q) /CSM/VH/VHO3-B/VHO348Q.Seq.d/                        172   8e-43
VHN745 (VHN745Q) /CSM/VH/VHN7-B/VHN745Q.Seq.d/                        172   8e-43
VHM413 (VHM413Q) /CSM/VH/VHM4-A/VHM413Q.Seq.d/                        172   8e-43
VHK349 (VHK349Q) /CSM/VH/VHK3-C/VHK349Q.Seq.d/                        172   8e-43
VHK296 (VHK296Q) /CSM/VH/VHK2-D/VHK296Q.Seq.d/                        172   8e-43
VHH766 (VHH766Q) /CSM/VH/VHH7-C/VHH766Q.Seq.d/                        172   8e-43
VHD811 (VHD811Q) /CSM/VH/VHD8-A/VHD811Q.Seq.d/                        172   8e-43
VHD661 (VHD661Q) /CSM/VH/VHD6-C/VHD661Q.Seq.d/                        172   8e-43
VHC708 (VHC708Q) /CSM/VH/VHC7-A/VHC708Q.Seq.d/                        172   8e-43

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds.   125   2e-25  1
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        42   2.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ295228_1(DQ295228|pid:none) Malawimonas jakobiformis translati...    44   0.002
AF213663_1(AF213663|pid:none) Euglena gracilis elongation factor...    43   0.004
DQ295231_1(DQ295231|pid:none) Reclinomonas americana translation...    43   0.004
D29835_1(D29835|pid:none) Giardia intestinalis mRNA for elongati...    42   0.008
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation...    41   0.014
AY618550_1(AY618550|pid:none) Trypanosoma cruzi elongation facto...    41   0.014
AM494972_25(AM494972|pid:none) Leishmania braziliensis chromosom...    41   0.014
CT005272_19(CT005272|pid:none) Leishmania major strain Friedlin,...    41   0.014
D50806_1(D50806|pid:none) Trypanosoma cruzi mRNA for elongation ...    41   0.014
AM910994_551(AM910994|pid:none) Plasmodium knowlesi strain H chr...    40   0.031

 psg: 0.89  gvh: 0.49  alm: 0.42  top: 0.50  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHH162 is cyt

>SHH162Z.Seq
NNNNNNNNNNTNGTAAAGGTATTGTTATTGGTGAANAANGTTGNATCGGTTNCCCATTAT
TTTNTGTCAAAGNTCATTTACCAGTATTANAATCCTTNGGTTTNNCCGNTGATTTACGTT
NCCNCACTGCCGGTCAAG