SHH148
Library SH
(Link to library)
Clone ID SHH148
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13283-1|Contig-U16307-1
Original site URL
Representative seq. ID SHH148P
(Link to Original site)
Representative DNA sequence
>SHH148 (SHH148Q) /CSM/SH/SHH1-B/SHH148Q.Seq.d/
AAATGTAACAACAGCAAAAGTAAAAGATACAATATTATCATCTTCACCTAAAACAACAAC
AACAGCCACAACAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAGTTATAANTATAATAGTTATTTANAAAGTAGTAATATTANTAA
TATTAGTAATGCNAGTTATACNGATAAACCANTGGATGATGANTATTATTATGGTGAATA
CGATGATGAAGATGATAGTANACCACCATCACAAGAAAAGATTGAATCTATTAATCTTTA
TAGANCACAATTTTCAATTATTCNAGATTGTNATCTATGGGGTGGTAAAACTTTAAAAGA
AGATGAATTCGATTATATTGATAGTTCTTCTGAAATACTTAAATATCGNATGATCATAAA
ATATATGGTAGAGAATCTTTTTTCATACATTCGAAAGAGATATAATCTAGAGGCAAATAA
GAATCCNTCCATCATTCATTTGATTGAAATCATCTCAATTATGACTAGAGGTACATTGAA
AGAGAAATCGGAATTGGTCTTTAAATTGGXXXXXXXXXXAGATGGACATCGATCAATACC
TATCGATCAATTCCCTCAGAAATTGGGATGCCAATGGTGATATCATCTTCACCGAACAAA
TCTATGTTCATAGTAAAGTTTTAATAGTGGATGATAAAATCGCAATCATTGGTAGTGCCA
ATATCAATGATCGAAGTTTAAATGGTTCAAGAGATAGTGAAATTTGTGCAATCATTGAAG
ATCGTGATTTAGTCGATAGTAGAGTGAATGGATTACCCTACAAAGCTGCTAAATTTGCTC
ATAATCTAAGATGTAATCTTTGGGAGTATCATTTGGGTCTCATATCGAACCCTGATCCTC
TCCTATCCGATCGTATCAAAGATTTAGTCATCGATAGTACCTATCATGATATTTGGAGAA
ATATGGCTCAAAGAAATTCTGCTATCTATAAAGAAATATTTGGTACCACTATCCCCGAGA
ATTGTACTAAAACCTCTCAATATAATCGTGGTTCTATCAAATTAACAAGTGAAGCTTTAG
AAACTTTATGTGGAATCAATGGTTTCTTAATGAATATAATACTTCAATGTTATCGAACTN
AAACCCCAACTTCAATT
sequence update 2002.10.25
Translated Amino Acid sequence
NVTTAKVKDTILSSSPKTTTTATTNNNNNNNNNNNNNNNNNNNNNSYXYNSYLXSSNIXN
ISNASYTDKPXDDXYYYGEYDDEDDSXPPSQEKIESINLYRXQFSIIXDCXLWGGKTLKE
DEFDYIDSSSEILKYRMIIKYMVENLFSYIRKRYNLEANKNPSIIHLIEIISIMTRGTLK
EKSELVFKL---

---MDIDQYLSINSLRNWDANGDIIFTEQIYVHSKVLIVDDKIAIIGSANINDRSLNGSR
DSEICAIIEDRDLVDSRVNGLPYKAAKFAHNLRCNLWEYHLGLISNPDPLLSDRIKDLVI
DSTYHDIWRNMAQRNSAIYKEIFGTTIPENCTKTSQYNRGSIKLTSEALETLCGINGFLM
NIILQCYRTXTPTSI


Translated Amino Acid sequence (All Frames)
Frame A:
kcnnskskryniiift*nnnnshnk*********************l*x**lfxk**yx*
y**cxlyx*txg**xllw*ir**r**xttitrkd*iy*sl*xtifnysrlxsmgw*nfkr
r*irly**ff*nt*isxdhkiygresffihskei*srgk*esxhhsfd*nhlnyd*ryie
reigigl*i---

---rwtsintyrsipseigmpmvissspnksmfivkf**wmiksqslvvpismiev*mvq
eivkfvqslkivi*sive*mdyptkllnllii*dvifgsiiwvsyrtlilsypivski*s
sivpimifgeiwlkeillsikkylvplsprivlkplniivvlsn*qvkl*klyvesmvs*
*i*yfnvielkpqlq

Frame B:
NVTTAKVKDTILSSSPKTTTTATTNNNNNNNNNNNNNNNNNNNNNSYXYNSYLXSSNIXN
ISNASYTDKPXDDXYYYGEYDDEDDSXPPSQEKIESINLYRXQFSIIXDCXLWGGKTLKE
DEFDYIDSSSEILKYRMIIKYMVENLFSYIRKRYNLEANKNPSIIHLIEIISIMTRGTLK
EKSELVFKL---

---dghrsipidqfpqklgcqw*yhlhrtnlcs**sfnsg**nrnhw*cqyq*skfkwfk
r**nlcnh*rs*fsr**sewitlqsc*ics*skm*slgvsfgshiep*sspirsyqrfsh
r*yls*ylekygskkfcyl*rniwyhyprely*nlsi*swfyqink*sfrnfmwnqwfln
eyntsmlsnxnpnfn

Frame C:
m*qqqk*kiqyyhlhlkqqqqpqqiiiiiiiiiiiiiiiiiiiiivixiivixkvvilxi
lvmxvixinxwmmxiimvntmmkmivxhhhkkrlnllifixhnfqlfxiviygvvkl*kk
mnsiilivllkylnix*s*niw*riffhtferdii*rqirixpsfi*lkssql*levh*k
rnrnwslnw---

---MDIDQYLSINSLRNWDANGDIIFTEQIYVHSKVLIVDDKIAIIGSANINDRSLNGSR
DSEICAIIEDRDLVDSRVNGLPYKAAKFAHNLRCNLWEYHLGLISNPDPLLSDRIKDLVI
DSTYHDIWRNMAQRNSAIYKEIFGTTIPENCTKTSQYNRGSIKLTSEALETLCGINGFLM
NIILQCYRTXTPTSI

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHH148 (SHH148Q) /CSM/SH/SHH1-B/SHH148Q.Seq.d/ 1794 0.0
VHN552 (VHN552Q) /CSM/VH/VHN5-C/VHN552Q.Seq.d/ 44 0.005
CHJ475 (CHJ475Q) /CSM/CH/CHJ4-D/CHJ475Q.Seq.d/ 44 0.005
CFD646 (CFD646Q) /CSM/CF/CFD6-B/CFD646Q.Seq.d/ 44 0.005
AHO169 (AHO169Q) /CSM/AH/AHO1-C/AHO169Q.Seq.d/ 44 0.005
VHK232 (VHK232Q) /CSM/VH/VHK2-B/VHK232Q.Seq.d/ 42 0.019
SLA428 (SLA428Q) /CSM/SL/SLA4-B/SLA428Q.Seq.d/ 42 0.019
FCL-AB24 (FCL-AB24Q) /CSM/FCL/FCL-AB/FCL-AB24Q.Seq.d/ 42 0.019
CHP454 (CHP454Q) /CSM/CH/CHP4-C/CHP454Q.Seq.d/ 42 0.019
AFK344 (AFK344Q) /CSM/AF/AFK3-B/AFK344Q.Seq.d/ 42 0.019

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB292163|CB292163.1 UCRCS01_04ac07_g1 Washington Navel orange cold acclimated flavedo &sequence. 38 0.023 2
CJ394867|CJ394867.1 Molgula tectiformis cDNA, gonad clone:mtgd023k21, 5' end. 50 0.11 1
AE003408|AE003408.1 Drosophila melanogaster, chromosome 2L, region 34C4-36A7 (Adh region), section 2 of 10 of the complete sequence. 34 0.24 2
AE003642|AE003642.3 Drosophila melanogaster chromosome 2L, section 51 of 83 of the complete sequence. 34 0.25 2
AC135277|AC135277.2 Rattus norvegicus clone CH230-338P9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 36 0.25 2
AC092243|AC092243.1 Drosophila melanogaster, chromosome 2L, region 34D-34E, BAC clone BACR09N24, complete sequence. 34 0.25 2
AC117975|AC117975.3 Rattus norvegicus clone CH230-430L24, *** SEQUENCING IN PROGRESS ***, 35 unordered pieces. 36 0.26 2
AC017704|AC017704.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 34 0.27 2
CB292162|CB292162.1 UCRCS01_04ac07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04ac07, mRNA sequence. 38 0.33 2
BI592664|BI592664.1 RH10418.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH10418 5, mRNA sequence. 34 0.33 2
dna update 2006. 4. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9M9W8) RecName: Full=Phospholipase D p2; Short=AtPLDp... 135 2e-30
(Q9LRZ5) RecName: Full=Phospholipase D p1; Short=AtPLDp... 135 3e-30
AC104272_16(AC104272|pid:none) Oryza sativa (japonica cultivar-g... 127 9e-28
AP008207_1122(AP008207|pid:none) Oryza sativa (japonica cultivar... 125 3e-27
AP004253_11(AP004253|pid:none) Oryza sativa Japonica Group genom... 125 3e-27
AE013599_153(AE013599|pid:none) Drosophila melanogaster chromoso... 124 8e-27
AE013599_154(AE013599|pid:none) Drosophila melanogaster chromoso... 124 8e-27
EU872188_1(EU872188|pid:none) Eptatretus burgeri phospholipase D... 117 6e-25
AB010810_1(AB010810|pid:none) Candida albicans gene for phosphol... 115 3e-24
AF038440_1(AF038440|pid:none) Homo sapiens phospholipase D2 (PLD... 113 1e-23
protein update 2009. 4.19
PSORT

psg: 0.75 gvh: 0.35 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
28.0 %: mitochondrial
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for SHH148 is nuc

5' end seq. ID SHH148F
5' end seq.
>SHH148F.Seq
AAATGTAACAACAGCAAAAGTAAAAGATACAATATTATCATCTTCACCTAAAACAACAAC
AACAGCCACAACAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAGTTATAANTATAATAGTTATTTANAAAGTAGTAATATTANTAA
TATTAGTAATGCNAGTTATACNGATAAACCANTGGATGATGANTATTATTATGGTGAATA
CGATGATGAAGATGATAGTANACCACCATCACAAGAAAAGATTGAATCTATTAATCTTTA
TAGANCACAATTTTCAATTATTCNAGATTGTNATCTATGGGGTGGTAAAACTTTAAAAGA
AGATGAATTCGATTATATTGATAGTTCTTCTGAAATACTTAAATATCGNATGATCATAAA
ATATATGGTAGAGAATCTTTTTTCATACATTCGAAAGAGATATAATCTAGAGGCAAATAA
GAATCCNTCCATCATTCATTTGATTGAAATCATCTCAATTATGACTAGAGGTACATTGAA
AGAGAAATCGGAATTGGTCTTTAAATTGGNNNNNNNNNN
Length of 5' end seq. 579
3' end seq. ID SHH148Z
3' end seq.
>SHH148Z.Seq
NNNNNNNNNNAGATGGACATCGATCAATACCTATCGATCAATTCCCTCAGAAATTGGGAT
GCCAATGGTGATATCATCTTCACCGAACAAATCTATGTTCATAGTAAAGTTTTAATAGTG
GATGATAAAATCGCAATCATTGGTAGTGCCAATATCAATGATCGAAGTTTAAATGGTTCA
AGAGATAGTGAAATTTGTGCAATCATTGAAGATCGTGATTTAGTCGATAGTAGAGTGAAT
GGATTACCCTACAAAGCTGCTAAATTTGCTCATAATCTAAGATGTAATCTTTGGGAGTAT
CATTTGGGTCTCATATCGAACCCTGATCCTCTCCTATCCGATCGTATCAAAGATTTAGTC
ATCGATAGTACCTATCATGATATTTGGAGAAATATGGCTCAAAGAAATTCTGCTATCTAT
AAAGAAATATTTGGTACCACTATCCCCGAGAATTGTACTAAAACCTCTCAATATAATCGT
GGTTCTATCAAATTAACAAGTGAAGCTTTAGAAACTTTATGTGGAATCAATGGTTTCTTA
ATGAATATAATACTTCAATGTTATCGAACTNAAACCCCAACTTCAATT
Length of 3' end seq. 588
Connected seq. ID SHH148P
Connected seq.
>SHH148P.Seq
AAATGTAACAACAGCAAAAGTAAAAGATACAATATTATCATCTTCACCTAAAACAACAAC
AACAGCCACAACAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAGTTATAANTATAATAGTTATTTANAAAGTAGTAATATTANTAA
TATTAGTAATGCNAGTTATACNGATAAACCANTGGATGATGANTATTATTATGGTGAATA
CGATGATGAAGATGATAGTANACCACCATCACAAGAAAAGATTGAATCTATTAATCTTTA
TAGANCACAATTTTCAATTATTCNAGATTGTNATCTATGGGGTGGTAAAACTTTAAAAGA
AGATGAATTCGATTATATTGATAGTTCTTCTGAAATACTTAAATATCGNATGATCATAAA
ATATATGGTAGAGAATCTTTTTTCATACATTCGAAAGAGATATAATCTAGAGGCAAATAA
GAATCCNTCCATCATTCATTTGATTGAAATCATCTCAATTATGACTAGAGGTACATTGAA
AGAGAAATCGGAATTGGTCTTTAAATTGG----------AGATGGACATCGATCAATACC
TATCGATCAATTCCCTCAGAAATTGGGATGCCAATGGTGATATCATCTTCACCGAACAAA
TCTATGTTCATAGTAAAGTTTTAATAGTGGATGATAAAATCGCAATCATTGGTAGTGCCA
ATATCAATGATCGAAGTTTAAATGGTTCAAGAGATAGTGAAATTTGTGCAATCATTGAAG
ATCGTGATTTAGTCGATAGTAGAGTGAATGGATTACCCTACAAAGCTGCTAAATTTGCTC
ATAATCTAAGATGTAATCTTTGGGAGTATCATTTGGGTCTCATATCGAACCCTGATCCTC
TCCTATCCGATCGTATCAAAGATTTAGTCATCGATAGTACCTATCATGATATTTGGAGAA
ATATGGCTCAAAGAAATTCTGCTATCTATAAAGAAATATTTGGTACCACTATCCCCGAGA
ATTGTACTAAAACCTCTCAATATAATCGTGGTTCTATCAAATTAACAAGTGAAGCTTTAG
AAACTTTATGTGGAATCAATGGTTTCTTAATGAATATAATACTTCAATGTTATCGAACTN
AAACCCCAACTTCAATT
Length of connected seq. 1147
Full length Seq ID -
Full length Seq. -
Length of full length seq. -