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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH135
Library SH
(Link to library)
Clone ID SHH135
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11082-1
Original site URL
Representative seq. ID SHH135P
(Link to Original site)
Representative DNA sequence 
>SHH135 (SHH135Q) /CSM/SH/SHH1-B/SHH135Q.Seq.d/
ATTATTGTTTTTTTTTATAAATTAATTATTTTTATCTATTTCTTTAAGACAAATTATATA
AATCAATTATATAAATAGATAATATAAAGAAAAATAGGAATAATAAAATAAATAAAAAAA
TAAAATAAAAAGATGTCAGCATTAACACAATCAGGATCAATAGAGAAACCATGTACAATT
TTAATCAACTATGATAAAGGTGATCCACCACAAGTCAATGAATTCAAACAAAACTTCGAA
CATGGTACAACTGAACAAAAGATTGAAACATTAAAAAAGGTTATTCTCTATACAATCAAT
GGTGAACCAATTCCACAATTACTTATGCCAATCATTCTTTATGTTATGCCATCAAATGAT
CATACCATTAAAAAACTATTACTCATCTATTGGGAAGTAATTAAAAAAACTCATCTTGGT
AAATTAAAATCCGAAATGATTTTAGTATGTAATTCATTATTAAATGATTTAAATCATCCA
AATGAATTTGTACGTGGTAGTACATTAAGATTTTTATGTAAATTAAGAGAAGCAGAAGTT
TTAGAACCATTAGTCCCATCTGTTCGTTCAAACCTTGAGAATAGACATGCATATTGTAGA
AGAAATGCAGTTTTAGCAATCTATAATATCTATAGTCACXXXXXXXXXXGCTTACGTTAG
AGTTCATCAATATGATATCGTTTTGGATATCTCTGTGTTCAATCAAACCAATGATACCCT
TCAAAACGTTACATTGGAATTGGTCACTTTGGGTGACTTGAAGATTTGCGAACGTGTCCC
ACCATTTACAATGGCTCCACGTGAAAAAACTTCAGCCAAAGCTTCAATCAAAGTCTCTTC
AACTGATAATGGTGTAATTATGGGTACAATTGCTTTCGATATCGCTGGTTCCGTCAGTAG
TATGTCTGATAAGAATTGTGTCATCCTTAATGAACTTCATATTGATGTTATCGATTATAT
TCTTCCAGCTAATCATCAATACACTGATGTTCTTTTCAGAAATCATTGGCTCGAATTTGA
ATGGGAAAATAAAATACCAGTCAATACAAATATTACCGATTTAGTTAAATACGTTCATCA
CATTAGTAAAGTCACCAACATGGGTATCTTAACACCAGAAGTTCATCTTTCAAATGATAC
TGGTATCCTCTCTGCTAATCTTTGTGCTAAAAGTGTTTTCGGTGAAGACGCACTTGCTAA
TATTTGTATTGAAAAACAAGCTGATGGTAAAATTTCTGGTTATATTAGAATTAGAGCTAA
AGTTCAATCAATTGCTGTTACATTAGG
sequence update 2002.10.25
Translated Amino Acid sequence 
iivffykliifiyffktnyinqlyk*ii*rkigiik*ikk*NKKMSALTQSGSIEKPCTI
LINYDKGDPPQVNEFKQNFEHGTTEQKIETLKKVILYTINGEPIPQLLMPIILYVMPSND
HTIKKLLLIYWEVIKKTHLGKLKSEMILVCNSLLNDLNHPNEFVRGSTLRFLCKLREAEV
LEPLVPSVRSNLENRHAYCRRNAVLAIYNIYSH---

---AYVRVHQYDIVLDISVFNQTNDTLQNVTLELVTLGDLKICERVPPFTMAPREKTSAK
ASIKVSSTDNGVIMGTIAFDIAGSVSSMSDKNCVILNELHIDVIDYILPANHQYTDVLFR
NHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGILTPEVHLSNDTGILSANLCAKSVF
GEDALANICIEKQADGKISGYIRIRAKVQSIAVTL
Translated Amino Acid sequence (All Frames) 
Frame A:
iivffykliifiyffktnyinqlyk*ii*rkigiik*ikk*NKKMSALTQSGSIEKPCTI
LINYDKGDPPQVNEFKQNFEHGTTEQKIETLKKVILYTINGEPIPQLLMPIILYVMPSND
HTIKKLLLIYWEVIKKTHLGKLKSEMILVCNSLLNDLNHPNEFVRGSTLRFLCKLREAEV
LEPLVPSVRSNLENRHAYCRRNAVLAIYNIYSH---

---AYVRVHQYDIVLDISVFNQTNDTLQNVTLELVTLGDLKICERVPPFTMAPREKTSAK
ASIKVSSTDNGVIMGTIAFDIAGSVSSMSDKNCVILNELHIDVIDYILPANHQYTDVLFR
NHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGILTPEVHLSNDTGILSANLCAKSVF
GEDALANICIEKQADGKISGYIRIRAKVQSIAVTL

Frame B:
llfffin*lflsislrqii*inyinr*ykek*e**nk*knkikrcqh*hnqdq*rnhvqf
*stmikvihhksmnsnktsnmvqlnkrlkh*krlfsiqsmvnqfhnylcqsffmlchqmi
iplknyyssigk*lkklilvn*npk*f*yvihy*mi*iiqmnlyvvvh*dfyvn*ekqkf
*nh*shlfvqtlridmhiveemqf*qsiisiv---

---ltlefinmisfwislcsikpmipfktlhwnwslwvt*rfanvshhlqwlhvkklqpk
lqskslqlimv*lwvqllsislvpsvvclirivsslmnfilmlsiiffqliintlmffse
iigsnlngkikyqsiqilpi*lntfitlvksptwvs*hqkfifqmilvssllifvlkvfs
vkthllifvlknklmvkflvilelelkfnqlllh*

Frame C:
ycffl*inyfylfl*dklyksii*idnikknrnnkinkkik*kdvsintirinretmynf
nql**r*sttsq*iqtklrtwyn*tkd*nikkgyslynqw*tnstityanhslcyaik*s
yh*ktithllgsn*knssw*ikirndfsm*fiik*fkssk*ictw*yikifm*ikrsrsf
rtispicsfkp*e*tcil*kkcsfsnl*yl*s---

---lr*sssi*yrfgylcvqsnq*ypskryigighfg*ledlrtcptiyngst*knfsqs
fnqslfn**wcnygyncfryrwfrq*yv**elchp**tsy*cyrlysss*ssih*csfqk
slari*mgk*ntsqykyyrfs*irssh**shqhgylntrsssfk*ywyplc*slc*kcfr
*rrtc*yly*kts*w*nfwly*n*s*ssinccyir
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH135 (SHH135Q) /CSM/SH/SHH1-B/SHH135Q.Seq.d/                       2190   0.0
VHP390 (VHP390Q) /CSM/VH/VHP3-D/VHP390Q.Seq.d/                       1265   0.0
VHO864 (VHO864Q) /CSM/VH/VHO8-C/VHO864Q.Seq.d/                       1265   0.0
VHE259 (VHE259Q) /CSM/VH/VHE2-C/VHE259Q.Seq.d/                       1265   0.0
VHC701 (VHC701Q) /CSM/VH/VHC7-A/VHC701Q.Seq.d/                       1265   0.0
VHB891 (VHB891Q) /CSM/VH/VHB8-D/VHB891Q.Seq.d/                       1265   0.0
VHA685 (VHA685Q) /CSM/VH/VHA6-D/VHA685Q.Seq.d/                       1265   0.0
SHF684 (SHF684Q) /CSM/SH/SHF6-D/SHF684Q.Seq.d/                       1265   0.0
AHQ161 (AHQ161Q) /CSM/AH/AHQ1-C/AHQ161Q.Seq.d/                       1265   0.0
AHL376 (AHL376Q) /CSM/AH/AHL3-D/AHL376Q.Seq.d/                       1265   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF247143|AF247143.1 Dictyostelium discoideum beta-COP protein mRNA, complete cds.  1265   0.0    1
U62960|U62960.1 Dictyostelium discoideum CopB (copB) mRNA, partial cds.  1265   0.0    1
DV977319|DV977319.1 GQ00610.B3.1_L03 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GenomeQuebec_Id:GQ00610_L03 5', mRNA sequence.    44   1e-05  3
DR569740|DR569740.1 WS02625.BR_J06 WS-PP-N-A-12 Picea glauca cDNA clone WS02625_J06 5, mRNA sequence.    44   1e-05  3
DY890578|DY890578.1 CeleSEQ9632 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ9632, mRNA sequence.    56   5e-05  2
DY892831|DY892831.1 CeleSEQ11848 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ11848, mRNA sequence.    56   5e-05  2
DY892567|DY892567.1 CeleSEQ11131 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ11131, mRNA sequence.    56   6e-05  2
DY894270|DY894270.1 CeleSEQ13804 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ13804, mRNA sequence.    56   6e-05  2
CJ337028|CJ337028.1 Molgula tectiformis cDNA, embryo just before hatching clone:mtbh003h21, 3' end.    38   5e-04  4
CZ545532|CZ545532.1 SRAA-aad62d08.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    34   0.008  3
dna update 2006. 4. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62960_1(U62960|pid:none) Dictyostelium discoideum CopB (copB) m...   423   e-117
(Q23924) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...   423   e-117
BT045694_1(BT045694|pid:none) Salmo salar clone ssal-rgf-528-379...   245   3e-63
(P23514) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...   243   1e-62
BC081657_1(BC081657|pid:none) Danio rerio coatomer protein compl...   242   2e-62
(Q9JIF7) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...   242   2e-62
AY294010_1(AY294010|pid:none) Danio rerio coatomer protein compl...   241   3e-62
BC073438_1(BC073438|pid:none) Xenopus laevis MGC80934 protein, m...   240   7e-62
BC168594_1(BC168594|pid:none) Xenopus tropicalis cDNA clone MGC:...   240   9e-62
(Q5R922) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...   239   1e-61
protein update 2009. 4.19
PSORT 

 psg: 0.83  gvh: 0.33  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: mitochondrial

>> prediction for SHH135 is cyt
5' end seq. ID SHH135F
5' end seq. 
>SHH135F.Seq
ATTATTGTTTTTTTTTATAAATTAATTATTTTTATCTATTTCTTTAAGACAAATTATATA
AATCAATTATATAAATAGATAATATAAAGAAAAATAGGAATAATAAAATAAATAAAAAAA
TAAAATAAAAAGATGTCAGCATTAACACAATCAGGATCAATAGAGAAACCATGTACAATT
TTAATCAACTATGATAAAGGTGATCCACCACAAGTCAATGAATTCAAACAAAACTTCGAA
CATGGTACAACTGAACAAAAGATTGAAACATTAAAAAAGGTTATTCTCTATACAATCAAT
GGTGAACCAATTCCACAATTACTTATGCCAATCATTCTTTATGTTATGCCATCAAATGAT
CATACCATTAAAAAACTATTACTCATCTATTGGGAAGTAATTAAAAAAACTCATCTTGGT
AAATTAAAATCCGAAATGATTTTAGTATGTAATTCATTATTAAATGATTTAAATCATCCA
AATGAATTTGTACGTGGTAGTACATTAAGATTTTTATGTAAATTAAGAGAAGCAGAAGTT
TTAGAACCATTAGTCCCATCTGTTCGTTCAAACCTTGAGAATAGACATGCATATTGTAGA
AGAAATGCAGTTTTAGCAATCTATAATATCTATAGTCACNNNNNNNNNN
Length of 5' end seq. 649
3' end seq. ID SHH135Z
3' end seq. 
>SHH135Z.Seq
NNNNNNNNNNGCTTACGTTAGAGTTCATCAATATGATATCGTTTTGGATATCTCTGTGTT
CAATCAAACCAATGATACCCTTCAAAACGTTACATTGGAATTGGTCACTTTGGGTGACTT
GAAGATTTGCGAACGTGTCCCACCATTTACAATGGCTCCACGTGAAAAAACTTCAGCCAA
AGCTTCAATCAAAGTCTCTTCAACTGATAATGGTGTAATTATGGGTACAATTGCTTTCGA
TATCGCTGGTTCCGTCAGTAGTATGTCTGATAAGAATTGTGTCATCCTTAATGAACTTCA
TATTGATGTTATCGATTATATTCTTCCAGCTAATCATCAATACACTGATGTTCTTTTCAG
AAATCATTGGCTCGAATTTGAATGGGAAAATAAAATACCAGTCAATACAAATATTACCGA
TTTAGTTAAATACGTTCATCACATTAGTAAAGTCACCAACATGGGTATCTTAACACCAGA
AGTTCATCTTTCAAATGATACTGGTATCCTCTCTGCTAATCTTTGTGCTAAAAGTGTTTT
CGGTGAAGACGCACTTGCTAATATTTGTATTGAAAAACAAGCTGATGGTAAAATTTCTGG
TTATATTAGAATTAGAGCTAAAGTTCAATCAATTGCTGTTACATTAGG
Length of 3' end seq. 648
Connected seq. ID SHH135P
Connected seq. 
>SHH135P.Seq
ATTATTGTTTTTTTTTATAAATTAATTATTTTTATCTATTTCTTTAAGACAAATTATATA
AATCAATTATATAAATAGATAATATAAAGAAAAATAGGAATAATAAAATAAATAAAAAAA
TAAAATAAAAAGATGTCAGCATTAACACAATCAGGATCAATAGAGAAACCATGTACAATT
TTAATCAACTATGATAAAGGTGATCCACCACAAGTCAATGAATTCAAACAAAACTTCGAA
CATGGTACAACTGAACAAAAGATTGAAACATTAAAAAAGGTTATTCTCTATACAATCAAT
GGTGAACCAATTCCACAATTACTTATGCCAATCATTCTTTATGTTATGCCATCAAATGAT
CATACCATTAAAAAACTATTACTCATCTATTGGGAAGTAATTAAAAAAACTCATCTTGGT
AAATTAAAATCCGAAATGATTTTAGTATGTAATTCATTATTAAATGATTTAAATCATCCA
AATGAATTTGTACGTGGTAGTACATTAAGATTTTTATGTAAATTAAGAGAAGCAGAAGTT
TTAGAACCATTAGTCCCATCTGTTCGTTCAAACCTTGAGAATAGACATGCATATTGTAGA
AGAAATGCAGTTTTAGCAATCTATAATATCTATAGTCAC----------GCTTACGTTAG
AGTTCATCAATATGATATCGTTTTGGATATCTCTGTGTTCAATCAAACCAATGATACCCT
TCAAAACGTTACATTGGAATTGGTCACTTTGGGTGACTTGAAGATTTGCGAACGTGTCCC
ACCATTTACAATGGCTCCACGTGAAAAAACTTCAGCCAAAGCTTCAATCAAAGTCTCTTC
AACTGATAATGGTGTAATTATGGGTACAATTGCTTTCGATATCGCTGGTTCCGTCAGTAG
TATGTCTGATAAGAATTGTGTCATCCTTAATGAACTTCATATTGATGTTATCGATTATAT
TCTTCCAGCTAATCATCAATACACTGATGTTCTTTTCAGAAATCATTGGCTCGAATTTGA
ATGGGAAAATAAAATACCAGTCAATACAAATATTACCGATTTAGTTAAATACGTTCATCA
CATTAGTAAAGTCACCAACATGGGTATCTTAACACCAGAAGTTCATCTTTCAAATGATAC
TGGTATCCTCTCTGCTAATCTTTGTGCTAAAAGTGTTTTCGGTGAAGACGCACTTGCTAA
TATTTGTATTGAAAAACAAGCTGATGGTAAAATTTCTGGTTATATTAGAATTAGAGCTAA
AGTTCAATCAATTGCTGTTACATTAGG
Length of connected seq. 1277
Full length Seq ID -
Full length Seq. -
Length of full length seq. -