NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHH102
Library SH
(Link to library)
Clone ID SHH102
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11869-1
Original site URL
Representative seq. ID SHH102P
(Link to Original site)
Representative DNA sequence 
>SHH102 (SHH102Q) /CSM/SH/SHH1-A/SHH102Q.Seq.d/
AAATTATTTAAATAATAAGATTTATAAAAATATTTAATTATAAAATGATGAAGTTATTAT
TTTCAATTATTTTCACCTTATTATTTATTAATTCAATTTATTCTCAATATGTTAGCCCAT
TAAGAATTAATTATTATCTTAATGATAATATTACAATTGTTACAAATGTTACAAAATATT
ATTTTACAAAATGGTCATTATTGAGACATGTAGGAGAAAGAAATGATATTAGATTAGTTT
TGGATTTTACTTGTAATTTAAATTCAACAAATAAGGAAGAAAGAATTTGCACTACATCAA
TGACCGGCAAAATGGCTCAGCTTTATGGTGAAGATTGGTATTGTAATGCAGTTAGTGGTG
CAAATGGTCAAACTTATAGTAATCATTTACCAGATTCATTATACCCATTTCCAATAATAT
ATAATTATACAAAACCATCAACACAAGGTAGTATTATAACTGTTAGTGGTGAATATTTAA
GATTTGGTACTGGTAATCCATTTAATATCGGTGGTATGACTGTAAATATGACAGATAGGG
ATCAATTCTATACCGACAAATTCGATAGTAATXXXXXXXXXXTTATGATCCAATTGAAAG
TGTTACAATTGGTGGTGTTAAATGTATAAATCCAATATTTATTGATTATGATAAATTATC
TTGTAATTTATTACCATCAAAAATAAAATCAAATTCAGATAATTTATTATATGTAAATGT
AACAGTTGGCGGTCAAAGTGGTGGTGGTAATATTTTCAAATATGATATTGATGAATTAAA
TGAAAATGAAAATAATGATGATGACGATGATAATGAAAGTGAAAAAAATAAGAGATTAAG
ATGGTTGGTACCAGCAATAATTATACCAATAGTTTTCGTTATTGGAGGTTTATCAGTGTT
GGTATTTATATTTAAAAAGAAATTACCATGTTTCTCTAAAAATAATAATGAATTAAAAAA
TAAATAAAAATAAAAATAAAAATAAAAATAAAAATAATCCAAGGAAAAATAAAAATAAAA
ATAACAACTACCTAAAACTAAAAAATAAAGTAAAAATAAAATAAAATAAATAAAAATAAG
AAATAAAAATAAAAACCCCAAATTNG
sequence update 2002.10.25
Translated Amino Acid sequence 
ii*IIRFIKIFNYKMMKLLFSIIFTLLFINSIYSQYVSPLRINYYLNDNITIVTNVTKYY
FTKWSLLRHVGERNDIRLVLDFTCNLNSTNKEERICTTSMTGKMAQLYGEDWYCNAVSGA
NGQTYSNHLPDSLYPFPIIYNYTKPSTQGSIITVSGEYLRFGTGNPFNIGGMTVNMTDRD
QFYTDKFDSN---

---YDPIESVTIGGVKCINPIFIDYDKLSCNLLPSKIKSNSDNLLYVNVTVGGQSGGGNI
FKYDIDELNENENNDDDDDNESEKNKRLRWLVPAIIIPIVFVIGGLSVLVFIFKKKLPCF
SKNNNELKNK*k*k*k*k*k*skek*k*k*qlpktkk*sknkik*ikirnknknpkx
Translated Amino Acid sequence (All Frames) 
Frame A:
klfk**dl*kyliik**syyfqlfspyylliqfilnmlah*eliiilmiilqllqmlqni
ilqnghy*dm*ekemild*fwillvi*iqqirkkefalhq*pakwlsfmvkigivmqlvv
qmvkliviiyqihythfq*yiiiqnhqhkvvl*llvvni*dlvlvihlisvv*l*i*qig
insiptnsiv---

---l*sn*kcynwwc*myksniy*l**iil*fitiknkikfr*fiickcnswrskwww*y
fqi*y**ik*k*k****r***k*kk*eikmvgtsnnytnsfrywrfisvgiyi*keitmf
l*k***ikk*ikikikikikiiqgkikikittt*n*kik*k*nkinknkk*k*kpqi

Frame B:
nylnnkiykni*l*ndeviifnyfhliiy*fnlfsic*pikn*lls***yyncykcykil
fykmviietcrrkk*y*isfgfyl*fkfnk*grknlhyindrqngsalw*rlvl*cs*wc
kwsnl**sftrfiipisnni*lyktintr*yync*w*ifkiwyw*si*yrwydckydr*g
silyrqir**---

---YDPIESVTIGGVKCINPIFIDYDKLSCNLLPSKIKSNSDNLLYVNVTVGGQSGGGNI
FKYDIDELNENENNDDDDDNESEKNKRLRWLVPAIIIPIVFVIGGLSVLVFIFKKKLPCF
SKNNNELKNK*k*k*k*k*k*skek*k*k*qlpktkk*sknkik*ikirnknknpkx

Frame C:
ii*IIRFIKIFNYKMMKLLFSIIFTLLFINSIYSQYVSPLRINYYLNDNITIVTNVTKYY
FTKWSLLRHVGERNDIRLVLDFTCNLNSTNKEERICTTSMTGKMAQLYGEDWYCNAVSGA
NGQTYSNHLPDSLYPFPIIYNYTKPSTQGSIITVSGEYLRFGTGNPFNIGGMTVNMTDRD
QFYTDKFDSN---

---miqlkvlqlvvlnv*iqylliminylviyyhqk*nqiqiiyym*m*qlavkvvvvif
snmilmn*mkmkimmmtmimkvkkird*dgwyqq*lyq*fsllevyqcwylylkrnyhvs
lkiimn*kinknknknknknnprknknknnnylklknkvkik*nk*k*eikiktpnx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHH102 (SHH102Q) /CSM/SH/SHH1-A/SHH102Q.Seq.d/                       1279   0.0
CHN454 (CHN454Q) /CSM/CH/CHN4-C/CHN454Q.Seq.d/                        882   0.0
CHH725 (CHH725Q) /CSM/CH/CHH7-B/CHH725Q.Seq.d/                        769   0.0
SHG654 (SHG654Q) /CSM/SH/SHG6-C/SHG654Q.Seq.d/                        369   e-101
SSL295 (SSL295Q) /CSM/SS/SSL2-D/SSL295Q.Seq.d/                         42   0.018
VSK176 (VSK176Q) /CSM/VS/VSK1-D/VSK176Q.Seq.d/                         38   0.28
VHC494 (VHC494Q) /CSM/VH/VHC4-D/VHC494Q.Seq.d/                         38   0.28
SSA489 (SSA489Q) /CSM/SS/SSA4-D/SSA489Q.Seq.d/                         38   0.28
FC-AO05 (FC-AO05Q) /CSM/FC/FC-AO/FC-AO05Q.Seq.d/                       38   0.28
VSI145 (VSI145Q) /CSM/VS/VSI1-B/VSI145Q.Seq.d/                         36   1.1
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX571688|BX571688.3 Zebrafish DNA sequence from clone DKEY-200H23.    42   0.001  8
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   0.003  12
BG496988|BG496988.1 602537563F1 NIH_MGC_59 Homo sapiens cDNA clone IMAGE:4656567 5', mRNA sequence.    54   0.007  1
CR735128|CR735128.4 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone  DKEY-201G7.    42   0.014  10
CN633272|CN633272.1 taf12a02.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3' similar to SW:CA1C_MOUSE Q60847 COLLAGEN ALPHA 1(XII) CHAIN PRECURSOR. ;, mRNA sequence.    40   0.085  2
CN633661|CN633661.1 taf54b04.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3' similar to TR:O43853 O43853 TYPE XII COLLAGEN ;, mRNA sequence.    40   0.085  2
AL954656|AL954656.9 Zebrafish DNA sequence from clone CH211-67N10 in linkage group 23.    42   0.11   6
AL358935|AL358935.3 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP3-324P2.    50   0.11   1
AL132766|AL132766.13 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP3-433F14.    50   0.11   1
CR926911|CR926911.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   0.23   4
dna update 2006. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...    55   3e-06
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    49   3e-04
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    47   0.001
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...    38   0.69
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...    38   0.69
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...    38   0.69
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS...    38   0.69
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS...    38   0.69
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...    35   3.4
A54280(A54280) cell differentiation protein LagC precursor - sli...    35   4.5
protein update 2009. 4.19
PSORT 

 psg: 0.87  gvh: 0.69  alm: 0.15  top: 0.20  tms: 0.07  mit: 0.44  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for SHH102 is exc
5' end seq. ID SHH102F
5' end seq. 
>SHH102F.Seq
AAATTATTTAAATAATAAGATTTATAAAAATATTTAATTATAAAATGATGAAGTTATTAT
TTTCAATTATTTTCACCTTATTATTTATTAATTCAATTTATTCTCAATATGTTAGCCCAT
TAAGAATTAATTATTATCTTAATGATAATATTACAATTGTTACAAATGTTACAAAATATT
ATTTTACAAAATGGTCATTATTGAGACATGTAGGAGAAAGAAATGATATTAGATTAGTTT
TGGATTTTACTTGTAATTTAAATTCAACAAATAAGGAAGAAAGAATTTGCACTACATCAA
TGACCGGCAAAATGGCTCAGCTTTATGGTGAAGATTGGTATTGTAATGCAGTTAGTGGTG
CAAATGGTCAAACTTATAGTAATCATTTACCAGATTCATTATACCCATTTCCAATAATAT
ATAATTATACAAAACCATCAACACAAGGTAGTATTATAACTGTTAGTGGTGAATATTTAA
GATTTGGTACTGGTAATCCATTTAATATCGGTGGTATGACTGTAAATATGACAGATAGGG
ATCAATTCTATACCGACAAATTCGATAGTAATNNNNNNNNNN
Length of 5' end seq. 582
3' end seq. ID SHH102Z
3' end seq. 
>SHH102Z.Seq
NNNNNNNNNNTTATGATCCAATTGAAAGTGTTACAATTGGTGGTGTTAAATGTATAAATC
CAATATTTATTGATTATGATAAATTATCTTGTAATTTATTACCATCAAAAATAAAATCAA
ATTCAGATAATTTATTATATGTAAATGTAACAGTTGGCGGTCAAAGTGGTGGTGGTAATA
TTTTCAAATATGATATTGATGAATTAAATGAAAATGAAAATAATGATGATGACGATGATA
ATGAAAGTGAAAAAAATAAGAGATTAAGATGGTTGGTACCAGCAATAATTATACCAATAG
TTTTCGTTATTGGAGGTTTATCAGTGTTGGTATTTATATTTAAAAAGAAATTACCATGTT
TCTCTAAAAATAATAATGAATTAAAAAATAAATAAAAATAAAAATAAAAATAAAAATAAA
AATAATCCAAGGAAAAATAAAAATAAAAATAACAACTACCTAAAACTAAAAAATAAAGTA
AAAATAAAATAAAATAAATAAAAATAAGAAATAAAAATAAAAACCCCAAATTNG
Length of 3' end seq. 534
Connected seq. ID SHH102P
Connected seq. 
>SHH102P.Seq
AAATTATTTAAATAATAAGATTTATAAAAATATTTAATTATAAAATGATGAAGTTATTAT
TTTCAATTATTTTCACCTTATTATTTATTAATTCAATTTATTCTCAATATGTTAGCCCAT
TAAGAATTAATTATTATCTTAATGATAATATTACAATTGTTACAAATGTTACAAAATATT
ATTTTACAAAATGGTCATTATTGAGACATGTAGGAGAAAGAAATGATATTAGATTAGTTT
TGGATTTTACTTGTAATTTAAATTCAACAAATAAGGAAGAAAGAATTTGCACTACATCAA
TGACCGGCAAAATGGCTCAGCTTTATGGTGAAGATTGGTATTGTAATGCAGTTAGTGGTG
CAAATGGTCAAACTTATAGTAATCATTTACCAGATTCATTATACCCATTTCCAATAATAT
ATAATTATACAAAACCATCAACACAAGGTAGTATTATAACTGTTAGTGGTGAATATTTAA
GATTTGGTACTGGTAATCCATTTAATATCGGTGGTATGACTGTAAATATGACAGATAGGG
ATCAATTCTATACCGACAAATTCGATAGTAAT----------TTATGATCCAATTGAAAG
TGTTACAATTGGTGGTGTTAAATGTATAAATCCAATATTTATTGATTATGATAAATTATC
TTGTAATTTATTACCATCAAAAATAAAATCAAATTCAGATAATTTATTATATGTAAATGT
AACAGTTGGCGGTCAAAGTGGTGGTGGTAATATTTTCAAATATGATATTGATGAATTAAA
TGAAAATGAAAATAATGATGATGACGATGATAATGAAAGTGAAAAAAATAAGAGATTAAG
ATGGTTGGTACCAGCAATAATTATACCAATAGTTTTCGTTATTGGAGGTTTATCAGTGTT
GGTATTTATATTTAAAAAGAAATTACCATGTTTCTCTAAAAATAATAATGAATTAAAAAA
TAAATAAAAATAAAAATAAAAATAAAAATAAAAATAATCCAAGGAAAAATAAAAATAAAA
ATAACAACTACCTAAAACTAAAAAATAAAGTAAAAATAAAATAAAATAAATAAAAATAAG
AAATAAAAATAAAAACCCCAAATTNG
Length of connected seq. 1096
Full length Seq ID -
Full length Seq. -
Length of full length seq. -