AFJ461
Library AF
(Link to library)
Clone ID AFJ461
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID AFJ461P
(Link to Original site)
Representative DNA sequence
>AFJ461 (AFJ461Q) /CSM/AF/AFJ4-C/AFJ461Q.Seq.d/
TTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGTTGTT
AAAGGTAATTTCTCTGATCCATCTTTTGACTGTAATAATATTACTGTAACATTTCCACCA
GGATCCGGAAAATTTAGGTTGTACTATGATGAAACTGGGGATAATCCTGTACCATTTTCA
TACGAATCGCCTATAATATCAAGCTCTGTCTCAGACTCATCAAAACAAATAATAACAATT
AATGGTGATAACTTCTTTACAGATAAAGACTTGGTTAAGGTTTCTTTTGATGGTATTGAC
CAACCCAATTTTATCATTTCAGTAAATCATAAACAAATTCAAGTGAATAACTATAATAGA
GTTGATCCCGGTCCAATGTCTGTTAATATTACCGTAGATGAGGTCTCAATAGAAAAGAAT
TATATTCATTGTTTCCCAGCAATAATAACATCAATATCATCAGTATCAAATCATTTAGAT
GGTATTGTTACAATTAAAGGTGAAAAATTATCTTCAACTTTAAATTCATCATTGACACCA
TCAATTACAATTGGTGATAAAGTATGTAAATTTATTAAATCAACAACAACTGAATTGGAA
TGTAAATTGGATGCAAATXXXXXXXXXXTTACAACATTCATTGGAGTTCGTTCAGGACCA
AGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAA
ATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTCTCAATGCA
AGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCA
CCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACT
GATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATCTC
CTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATCTCCA
TCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTA
ATAATAGGTTCTACAATTGGTAGTGTTGGTGGTGCTCTTGCNATCGGTGCTCTTGCCTAT
TACTTTAAAATACCNTTTCGTGTTAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAA
TGTAATTAAAATCACAAATCACATATGTGTAAAATAAAACTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
LFGGPNFLINSIDVNKPFVVKGNFSDPSFDCNNITVTFPPGSGKFRLYYDETGDNPVPFS
YESPIISSSVSDSSKQIITINGDNFFTDKDLVKVSFDGIDQPNFIISVNHKQIQVNNYNR
VDPGPMSVNITVDEVSIEKNYIHCFPAIITSISSVSNHLDGIVTIKGEKLSSTLNSSLTP
SITIGDKVCKFIKSTTTELECKLDAN---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDILNASLTVSSE
TVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSF
QYNVTIEEIKLSPSPNVSQXDVETKSSKPSNGLIIGSTIGSVGGALAIGALAYYFKIPFR
VKKFIGKKF*kkkcn*nhkshmckikl


Translated Amino Acid sequence (All Frames)
Frame A:
LFGGPNFLINSIDVNKPFVVKGNFSDPSFDCNNITVTFPPGSGKFRLYYDETGDNPVPFS
YESPIISSSVSDSSKQIITINGDNFFTDKDLVKVSFDGIDQPNFIISVNHKQIQVNNYNR
VDPGPMSVNITVDEVSIEKNYIHCFPAIITSISSVSNHLDGIVTIKGEKLSSTLNSSLTP
SITIGDKVCKFIKSTTTELECKLDAN---

---lqhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqifsmqa*qfhq
klflfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyisyltqhh
fnimsqlkklnylhhqtlvkxmlklnhpnhqmv***vlqlvvlvvllxsvllpitlkyxf
vlknl*vknfkkknvikitnhicvk*n

Frame B:
ylvvlislliplm*inllllkvislihlltviill*hfhqdpenlgctmmklgiilyhfh
tnrl*yqalsqthqnk**qlmvitslqiktwlrfllmvltnpilsfq*iinkfk*itiie
lipvqcllilp*mrsq*kriifivsqq**hqyhqyqii*mvllqlkvknylql*ihh*hh
qlqlvikyvnllnqqqlnwnvnwmq---

---ynihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyrysqcklnsfir
ncssfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiispi*lnii
si*chn*rn*iisitkr*sxrc*n*iiqtikwfnnrfynw*cwwcscxrcsclll*ntxs
c*kiyr*kilkkkm*lksqityv*nkt

Frame C:
iwws*fpy*fh*ck*tfcc*r*fl*sif*l**yycnistrirki*vvl**nwg*sctifi
riayniklclrliktnnnn*w**llyr*rlg*gff*wy*ptqfyhfsks*tnsse*l**s
*srsnvc*yyrr*glnrkelyslfpsnnniniisiksfrwycyn*r*kiifnfkfiidti
nynw**sm*iy*innn*igm*igck---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDILNASLTVSSE
TVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSF
QYNVTIEEIKLSPSPNVSQXDVETKSSKPSNGLIIGSTIGSVGGALAIGALAYYFKIPFR
VKKFIGKKF*kkkcn*nhkshmckikl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFJ461 (AFJ461Q) /CSM/AF/AFJ4-C/AFJ461Q.Seq.d/ 2319 0.0
CHO549 (CHO549Q) /CSM/CH/CHO5-C/CHO549Q.Seq.d/ 1088 0.0
SHC854 (SHC854Q) /CSM/SH/SHC8-C/SHC854Q.Seq.d/ 1086 0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/ 1086 0.0
CHL785 (CHL785Q) /CSM/CH/CHL7-D/CHL785Q.Seq.d/ 1086 0.0
CFI183 (CFI183Q) /CSM/CF/CFI1-D/CFI183Q.Seq.d/ 1086 0.0
AHR269 (AHR269Q) /CSM/AH/AHR2-C/AHR269Q.Seq.d/ 1086 0.0
AHL496 (AHL496Q) /CSM/AH/AHL4-D/AHL496Q.Seq.d/ 1086 0.0
AHH604 (AHH604Q) /CSM/AH/AHH6-A/AHH604Q.Seq.d/ 1086 0.0
AHC117 (AHC117Q) /CSM/AH/AHC1-A/AHC117Q.Seq.d/ 1086 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds. 1086 0.0 4
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds. 1086 0.0 4
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds. 90 1e-94 10
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 244 4e-81 9
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 36 1e-05 13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.017 14
AX392733|AX392733.1 Sequence 23 from Patent WO0212526. 44 0.076 7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 0.098 12
AX608179|AX608179.1 Sequence 6108 from Patent WO02092818. 46 0.37 2
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 38 0.55 5
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli... 335 2e-90
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS... 328 3e-88
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS... 328 3e-88
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS... 327 7e-88
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS... 326 1e-87
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS... 326 1e-87
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS... 326 1e-87
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS... 315 2e-84
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS... 315 2e-84
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS... 315 2e-84
protein update 2009. 4.23
PSORT

psg: 0.86 gvh: 0.36 alm: 0.34 top: 0.47 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
12.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for AFJ461 is cyt

5' end seq. ID AFJ461F
5' end seq.
>AFJ461F.Seq
TTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGTTGTT
AAAGGTAATTTCTCTGATCCATCTTTTGACTGTAATAATATTACTGTAACATTTCCACCA
GGATCCGGAAAATTTAGGTTGTACTATGATGAAACTGGGGATAATCCTGTACCATTTTCA
TACGAATCGCCTATAATATCAAGCTCTGTCTCAGACTCATCAAAACAAATAATAACAATT
AATGGTGATAACTTCTTTACAGATAAAGACTTGGTTAAGGTTTCTTTTGATGGTATTGAC
CAACCCAATTTTATCATTTCAGTAAATCATAAACAAATTCAAGTGAATAACTATAATAGA
GTTGATCCCGGTCCAATGTCTGTTAATATTACCGTAGATGAGGTCTCAATAGAAAAGAAT
TATATTCATTGTTTCCCAGCAATAATAACATCAATATCATCAGTATCAAATCATTTAGAT
GGTATTGTTACAATTAAAGGTGAAAAATTATCTTCAACTTTAAATTCATCATTGACACCA
TCAATTACAATTGGTGATAAAGTATGTAAATTTATTAAATCAACAACAACTGAATTGGAA
TGTAAATTGGATGCAAAT----------
Length of 5' end seq. 618
3' end seq. ID AFJ461Z
3' end seq.
>AFJ461Z.Seq
----------TTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTAT
ATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTA
GCAATAATTCGTGGTTATAGTTTTACAGATATTCTCAATGCAAGCTTAACAGTTTCATCA
GAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGAT
GATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCAT
TCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATCTCCTATTTAACTCAACATCA
TTTCAATATAATGTCACAATTGAAGAAATTAAATTATCTCCATCACCAAACGTTAGTCAA
ANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTCTACAATT
GGTAGTGTTGGTGGTGCTCTTGCNATCGGTGCTCTTGCCTATTACTTTAAAATACCNTTT
CGTGTTAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAATTAAAATCACAAA
TCACATATGTGTAAAATAAAACTA
Length of 3' end seq. 614
Connected seq. ID AFJ461P
Connected seq.
>AFJ461P.Seq
TTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGTTGTT
AAAGGTAATTTCTCTGATCCATCTTTTGACTGTAATAATATTACTGTAACATTTCCACCA
GGATCCGGAAAATTTAGGTTGTACTATGATGAAACTGGGGATAATCCTGTACCATTTTCA
TACGAATCGCCTATAATATCAAGCTCTGTCTCAGACTCATCAAAACAAATAATAACAATT
AATGGTGATAACTTCTTTACAGATAAAGACTTGGTTAAGGTTTCTTTTGATGGTATTGAC
CAACCCAATTTTATCATTTCAGTAAATCATAAACAAATTCAAGTGAATAACTATAATAGA
GTTGATCCCGGTCCAATGTCTGTTAATATTACCGTAGATGAGGTCTCAATAGAAAAGAAT
TATATTCATTGTTTCCCAGCAATAATAACATCAATATCATCAGTATCAAATCATTTAGAT
GGTATTGTTACAATTAAAGGTGAAAAATTATCTTCAACTTTAAATTCATCATTGACACCA
TCAATTACAATTGGTGATAAAGTATGTAAATTTATTAAATCAACAACAACTGAATTGGAA
TGTAAATTGGATGCAAAT----------TTACAACATTCATTGGAGTTCGTTCAGGACCA
AGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAA
ATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTCTCAATGCA
AGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCA
CCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACT
GATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATCTC
CTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATCTCCA
TCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTA
ATAATAGGTTCTACAATTGGTAGTGTTGGTGGTGCTCTTGCNATCGGTGCTCTTGCCTAT
TACTTTAAAATACCNTTTCGTGTTAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAA
TGTAATTAAAATCACAAATCACATATGTGTAAAATAAAACTA
Length of connected seq. 1232
Full length Seq ID -
Full length Seq. -
Length of full length seq. -