SHG806
Library SH
(Link to library)
Clone ID SHG806
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHG806 (SHG806Q) /CSM/SH/SHG8-A/SHG806Q.Seq.d/
XXXXXXXXXXAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATA
AGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCA
TTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAG
CTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAA
ATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATA
AAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAG
TTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTC
AAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTNTACTTGA
GTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATTAATAAACAA
GANAATCAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---IERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEA
AQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQV
QATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKN**tr
xs


Translated Amino Acid sequence (All Frames)
Frame A:
---IERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEA
AQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQV
QATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKN**tr
xs


Frame B:
---lkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmkl
pnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkf
kqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlxt*vmlkklnlnwmlnwlkinkqx
nq


Frame C:
---*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*sc
pt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttss
snkc*ttnr*tt*syqrisktrstketknstrerccxle*c*ksst*igc*ig*klinkx
i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/ 634 0.0
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 634 0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 634 0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 634 0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 634 0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/ 634 0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/ 634 0.0
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/ 634 0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/ 634 0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/ 634 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 634 0.0 3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 3e-25 1
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 0.081 10
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X. 36 0.10 5
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.21 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.21 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.21 1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence. 48 0.21 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.21 1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence. 48 0.21 1
dna update 2006. 4. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 200 2e-50
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom... 35 0.95
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 0.96
AL844508_319(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 33 6.1
AL929359_9(AL929359|pid:none) Plasmodium falciparum strain 3D7, ... 33 6.1
AE016796_1436(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 33 6.1
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 32 8.0

protein update 2009. 5.29
PSORT

psg: 0.74 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for SHG806 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHG806Z
3' end seq.
>SHG806Z.Seq
NNNNNNNNNNAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATA
AGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCA
TTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAG
CTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAA
ATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATA
AAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAG
TTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTC
AAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTNTACTTGA
GTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATTAATAAACAA
GANAATCAA
Length of 3' end seq. 549
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -