>SHG790 (SHG790Q) /CSM/SH/SHG7-D/SHG790Q.Seq.d/
XXXXXXXXXXTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGT
AATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAAT
AATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAA
AATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAA
AATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAA
GAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAAT
CAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTT
GAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATT
CAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGAT
GCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAA
CAACAGTCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATC
CAAGT

---NKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIEN
GEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQ
QQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDA
ELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQ

Frame A:
---e*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*k
w*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ks
ttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc
*ig*k**tresr*efssrettvs*pn*ksikkyst*ttnps


Frame B:
---NKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIEN
GEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQ
QQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDA
ELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQ


Frame C:
---ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkm
vkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkin
nnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwml
nwlkiinkrikmri*fkrnnslltklkin*kifnmnnksk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        618   e-176
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        618   e-176
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        618   e-176
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        618   e-176
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        618   e-176
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        618   e-176
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/                        618   e-176
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        618   e-176
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        618   e-176
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        618   e-176

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   618   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   103   5e-18  1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.020  7
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.26   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.26   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.26   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.26   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.26   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.26   1
AC090712|AC090712.4 Mus musculus chromosome 6 clone RP23-230F22 strain C57BL6/J, complete sequence.    48   0.26   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   286   5e-76
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.30
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    36   0.86
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.5
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.5
AP009511_3(AP009511|pid:none) Uncultured Termite group 1 bacteri...    35   1.9
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    35   1.9
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   2.5
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.5
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    34   3.3

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHG790 is nuc

>SHG790Z.Seq
NNNNNNNNNNTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGT
AATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAAT
AATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAA
AATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAA
AATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAA
GAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAAT
CAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTT
GAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATT
CAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGAT
GCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAA
CAACAGTCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATC
CAAGT