>SHG661 (SHG661Q) /CSM/SH/SHG6-C/SHG661Q.Seq.d/
GGTAGTGTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTA
ATTATTTTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGT
AAATATCCAGGTTATTCAACTCAAGGNGTTGCAAAAACAAATAATGGTTATGAGGCAACA
CTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATANAACAATTAAATTTTCAATTA
ACTTTTGAAACTAGTCAAATTTTTANAGTTAGAATTACTGACCCAAATAATCAAAGATGG
GAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAACTGATTATATA
ATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTT
TTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTAT
TATTTANAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGGXXXX
XXXXXX

gsvlki*TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVAKTNNGYEAT
LNLISAGPYGNDIXQLNFQLTFETSQIFXVRITDPNNQRWEVPPTVNQLVGENPDSTDYI
IEFTNNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIYGL--
-

Frame A:
gsvlki*TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVAKTNNGYEAT
LNLISAGPYGNDIXQLNFQLTFETSQIFXVRITDPNNQRWEVPPTVNQLVGENPDSTDYI
IEFTNNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIYGL--
-


Frame B:
vvc*kyklklkkk*nfclh*lfflllyyfxlldhyqhhyvniqviqlkxlqkqimvmrqh
ltlfqqvhmvtixnn*ifn*llklvkflxlelltqiikdgkshqllin*lekiqiqlii*
lnlqiihlvlqqlvfqlvkfyliqlnqvivhlmv*fiqiiixn*vhhsqrviqifmv*--
-


Frame C:
*cvknin*n*kknetfvfinyffcyciilxcwiiisiim*isrlfnsrxcknk*wl*gnt
*pyfsrsiw*ryxtikfsinf*n*snfxs*ny*pk*skmgsptnc*siswrksrfn*lyn
*iyk*siwfcsnsyfnw*sfi*ynstk*lfi*wfnlfkllfxikyiihre*skylwf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG661 (SHG661Q) /CSM/SH/SHG6-C/SHG661Q.Seq.d/                        926   0.0
SHK278 (SHK278Q) /CSM/SH/SHK2-D/SHK278Q.Seq.d/                        912   0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/                        912   0.0
SHI181 (SHI181Q) /CSM/SH/SHI1-D/SHI181Q.Seq.d/                        906   0.0
AHA118 (AHA118Q) /CSM/AH/AHA1-A/AHA118Q.Seq.d/                        906   0.0
SHK458 (SHK458Q) /CSM/SH/SHK4-C/SHK458Q.Seq.d/                        902   0.0
CHG731 (CHG731Q) /CSM/CH/CHG7-B/CHG731Q.Seq.d/                        902   0.0
AHA841 (AHA841Q) /CSM/AH/AHA8-B/AHA841Q.Seq.d/                        900   0.0
SHJ667 (SHJ667Q) /CSM/SH/SHJ6-C/SHJ667Q.Seq.d/                        896   0.0
AHA237 (AHA237Q) /CSM/AH/AHA2-B/AHA237Q.Seq.d/                        896   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    36   0.014  7
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    36   0.12   4
AL449924|AL449924.1 Streptococcus pneumoniae serotype 19F  *** SEQUENCING IN PROGRESS  *** from clone G54.    36   0.56   3
BE323805|BE323805.2 NF010E10PL1F1071 Phosphate starved leaf Medicago truncatula cDNA clone NF010E10PL 5', mRNA sequence.    46   0.83   1
BH944911|BH944911.1 obu81h08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46   0.83   1
AY653733|AY653733.1 Acanthamoeba polyphaga mimivirus, complete genome.    46   0.83   1
DY772000|DY772000.1 5TH_new03_P06 Bicyclus anynana wings - 5TH instar larvae Bicyclus anynana cDNA 3', mRNA sequence.    36   1.0    2
DY771880|DY771880.1 5TH_new03_J24 Bicyclus anynana wings - 5TH instar larvae Bicyclus anynana cDNA 3', mRNA sequence.    36   1.0    2
AL606494|AL606494.4 Mouse DNA sequence from clone RP23-198B6 on chromosome 2.    40   1.0    4
DX401208|DX401208.1 GH__Sa0046F06.b1 Gossypium herbaceum WGS library Gossypium herbaceum genomic similar to Gossypium herbaceum repetitive sequence (unknown type), genomic survey sequence.    42   1.6    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294013_13(BX294013|pid:none) Neurospora crassa DNA linkage gro...    86   6e-16
CU640366_6(CU640366|pid:none) Podospora anserina genomic DNA chr...    82   9e-15
AL163814_11(AL163814|pid:none) Arabidopsis thaliana DNA chromoso...    81   1e-14
AF014806_1(AF014806|pid:none) Arabidopsis thaliana alpha-glucosi...    81   1e-14
AM920436_1367(AM920436|pid:none) Penicillium chrysogenum Wiscons...    81   2e-14
BC115034_1(BC115034|pid:none) Homo sapiens sucrase-isomaltase (a...    80   3e-14
BC116452_1(BC116452|pid:none) Homo sapiens sucrase-isomaltase (a...    80   3e-14
(P14410) RecName: Full=Sucrase-isomaltase, intestinal; Contains:...    80   3e-14
M22616_1(M22616|pid:none) Human sucrase-isomaltase mRNA, partial...    80   3e-14
AM467592_1(AM467592|pid:none) Vitis vinifera contig VV78X160209....    78   2e-13

 psg: 1.02  gvh: 0.72  alm: 0.52  top: 0.27  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for SHG661 is exc

>SHG661F.Seq
GGTAGTGTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTA
ATTATTTTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGT
AAATATCCAGGTTATTCAACTCAAGGNGTTGCAAAAACAAATAATGGTTATGAGGCAACA
CTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATANAACAATTAAATTTTCAATTA
ACTTTTGAAACTAGTCAAATTTTTANAGTTAGAATTACTGACCCAAATAATCAAAGATGG
GAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAACTGATTATATA
ATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTT
TTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTAT
TATTTANAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGGNNNN
NNNNNN