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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG659
Library SH
(Link to library)
Clone ID SHG659
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHG659P
(Link to Original site)
Representative DNA sequence 
>SHG659 (SHG659Q) /CSM/SH/SHG6-C/SHG659Q.Seq.d/
ACATTGACCCGCAATTAGTAATTAGTAAAGAATGGAATTAAAACATTTAACTATTTTTTT
ATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGA
AAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTT
AGATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTT
TGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTT
TTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCAC
ATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAA
AATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTG
TGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGG
AGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAA
CCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACXXXXXXXXXXC
TAATCGATGGTAAACCATGTACACAACCTGAAATCAACATTCACACTTATTCTAGTTTAA
CCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCA
ATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATG
AATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCG
GTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTG
AAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTC
TTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAA
GCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCC
CACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATC
CAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAAT
CAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTAC
AATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAG
CAAATATTACTCAATATTTTTTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
h*paisn**RMELKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILL
DPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFT
YNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTG
DIPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVEN---

---LIDGKPCTQPEINIHTYSSLTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQ
FKYESTISYSENKSSGFPNEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVD
NLRLKLREKHAAEIAKHYSFGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfp
nsnpiisnsklnlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*in
kkkanitqyfl
Translated Amino Acid sequence (All Frames) 
Frame A:
tltrn**lvkngiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ssyfhsf
rsk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrrir*fh
i*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*cfisnw
rytk*tnnr*prkyyhsrk*plqhpn*n*fk*sr*k---

---LIDGKPCTQPEINIHTYSSLTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQ
FKYESTISYSENKSSGFPNEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVD
NLRLKLREKHAAEIAKHYSFGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfp
nsnpiisnsklnlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*in
kkkanitqyfl

Frame B:
h*paisn**RMELKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQVISILL
DPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFT
YNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTG
DIPNKPTIDDQGNITIQGSNLYNTQIKINSNDPVEN---

---*smvnhvhnlkstftlilv*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsn
lnmnqqlvivkishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepekhldqli
iyvlnfvrnmllkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfq
iqiq*ypiln*t*tkftnl*snnqfiscncfcsciisssisiynfflllliylkqink*i
kkkqillnif*

Frame C:
idpqlviskewn*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmiklfpff*
iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*edplish
itilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fimlhikle
iyqinqqsmtkeilpfkevtfttpklkliqmiplk---

---nrw*tmytt*nqhshlf*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi
*i*inn*l**k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**
sts*ts*etcc*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntisk
fksnniqf*ikpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*
kkskyysiff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG659 (SHG659Q) /CSM/SH/SHG6-C/SHG659Q.Seq.d/                       2397   0.0
SHA870 (SHA870Q) /CSM/SH/SHA8-C/SHA870Q.Seq.d/                       2389   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1324   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1324   0.0
SHJ615 (SHJ615Q) /CSM/SH/SHJ6-A/SHJ615Q.Seq.d/                       1324   0.0
SHG893 (SHG893Q) /CSM/SH/SHG8-D/SHG893Q.Seq.d/                       1324   0.0
CHI128 (CHI128Q) /CSM/CH/CHI1-B/CHI128Q.Seq.d/                       1324   0.0
CHF618 (CHF618Q) /CSM/CH/CHF6-A/CHF618Q.Seq.d/                       1324   0.0
AHM163 (AHM163Q) /CSM/AH/AHM1-C/AHM163Q.Seq.d/                       1324   0.0
AHH644 (AHH644Q) /CSM/AH/AHH6-B/AHH644Q.Seq.d/                       1324   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   242   3e-94  13
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.11   2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.11   2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.11   2
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.             34   0.12   15
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        38   0.23   17
AC122168|AC122168.14 Medicago truncatula clone mth2-4o4, complete sequence.    42   0.23   6
DU571553|DU571553.1 OO__Ba0057P22.f OO__Ba Oryza officinalis genomic clone OO__Ba0057P22 5', genomic survey sequence.    48   0.55   1
dna update 2006. 4. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   393   e-108
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   392   e-107
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   392   e-107
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   392   e-107
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   273   4e-75
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   273   4e-75
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   273   7e-75
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   273   7e-75
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   272   2e-74
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   271   2e-74
protein update 2009. 4.19
PSORT 

 psg: 1.01  gvh: 0.44  alm: 0.08  top: 0.37  tms: 0.13  mit: 0.32  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHG659 is end
5' end seq. ID SHG659F
5' end seq. 
>SHG659F.Seq
ACATTGACCCGCAATTAGTAATTAGTAAAGAATGGAATTAAAACATTTAACTATTTTTTT
ATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGA
AAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTT
AGATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTT
TGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTT
TTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCAC
ATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAA
AATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTG
TGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGG
AGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAA
CCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACNNNNNNNNNN
Length of 5' end seq. 659
3' end seq. ID SHG659Z
3' end seq. 
>SHG659Z.Seq
NNNNNNNNNNCTAATCGATGGTAAACCATGTACACAACCTGAAATCAACATTCACACTTA
TTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAA
TACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCA
ATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGA
AATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAA
AACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGA
TAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATT
TGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATT
ATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCC
AAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTAT
AATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAA
TATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAA
TAAAAAAAAAGCAAATATTACTCAATATTTTTTAA
Length of 3' end seq. 755
Connected seq. ID SHG659P
Connected seq. 
>SHG659P.Seq
ACATTGACCCGCAATTAGTAATTAGTAAAGAATGGAATTAAAACATTTAACTATTTTTTT
ATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTATCTAATAAACAATGA
AAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAGTTATTTCCATTCTTTT
AGATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGATGGAAAGTTTTATTT
TGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTT
TTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCAC
ATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAA
AATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTG
TGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGG
AGATATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAA
CCTTTACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAAC----------C
TAATCGATGGTAAACCATGTACACAACCTGAAATCAACATTCACACTTATTCTAGTTTAA
CCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACTCCAATACTAAATTCA
ATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATG
AATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCG
GTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTG
AAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTC
TTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAA
GCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCC
CACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTATTTCCAAATTCAAATC
CAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAATCTATAATCAAATAAT
CAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTAC
AATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAG
CAAATATTACTCAATATTTTTTAA
Length of connected seq. 1394
Full length Seq ID -
Full length Seq. -
Length of full length seq. -