AFJ440
Library AF
(Link to library)
Clone ID AFJ440
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10768-1
Original site URL
Representative seq. ID AFJ440P
(Link to Original site)
Representative DNA sequence
>AFJ440 (AFJ440Q) /CSM/AF/AFJ4-B/AFJ440Q.Seq.d/
AATTTTATATATTTGAATACATAATTTATATTTATTATTTTATAAATATATATTTTTAAT
ATGGCACATATTGATCGTATTAATATACTTGCCAATCATCTTTCAAAGGAAGAAGAAGAA
GAAAATGAATTATTAACTTCACCAGTTTCTGCTGATAAAAAAAAAGAGACAGTTACAGTT
ACAGATAATAGAAATGGTAAAAGCTATGATTTCAAAATTAAAAATGACACTATTAATGCT
TTAAACTTTAAAGAATTACAATTAGCCAAAGGTGATGGTGGTTTAATGATTTATGATCCA
GGTTTCCAAAATACAGCAGTTGTAACATCATACATTACATATATTGATGGTGATAAAGGA
ATTTTAAGATACAGAGGTTATCCAATTGAAGAATTAGCAGAAAGATCAAACTTTTTAGAG
GTTGCTTATCTTTTAATCAATGGTAACTTACCAAATAAATCACAATTAGATGGTTGGAGT
AATAAAATTATGACTCATACTTTTCTTCATGAAAATTTGGTTGGTCTTATGAAAACATTT
AGATATGATGCTCATCCAATGGGTATGXXXXXXXXXXCCAGTTTTATGTCGTGCATTGGA
AATTTTATTCATTCTTCATGCAGATCATGAATTAAATTGTTCAACCGCTGCAATGAGACA
TATTTCATCATCAGGTACCGATCCATACACAAGTGTTGCTGGTGCCGCTGGTGCATTATA
TGGTCCATCTCATGGTGGTGCCAATGAGGGCCGTATTGGATATGTTAATTCATATCGGTT
CCAAAGAGAATATTCCACAATTCATTTCAGATGTAAAGAGCAAAAAGAAGAAATTAATGG
GTTTCGGTCATAGAATCTACAAAAACTATGATCCAAGAGCCAAGATCATTCGTAGAGTAG
CTTATGAAGTTTTCGAAAGTTTAGGTAAAGAACCATTGATTGAAGTAGCCACTGAGTTGG
AGAAACAAGCCTTGGAAGATGAATACTTTGTAAGCAGAAAACTTTATCCAAATGTTGATT
TCTACTCTGGTCTCATCTATAAAGCAATGGGTTTCCCAACTGATATGTTCCCAGTTTTAT
TCACTATTCCACGTGCCATTGGTTGGTTAGCTCATTGGGTAGAACATTTAGAAGATCCAG
AAACTAAAATCTATCGTCCACGTCAAGTTTACAAAGGTGAATGGTTTAGAAACTATGTCC
CAATCGATGGTAGACCACCAGCTAAAGTTCGTTCTCAGGAAGTTATTCGTCTGCTACCAC
TAAAAGAATTCAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
nfiylnt*fifiil*IYIFNMAHIDRINILANHLSKEEEEENELLTSPVSADKKKETVTV
TDNRNGKSYDFKIKNDTINALNFKELQLAKGDGGLMIYDPGFQNTAVVTSYITYIDGDKG
ILRYRGYPIEELAERSNFLEVAYLLINGNLPNKSQLDGWSNKIMTHTFLHENLVGLMKTF
RYDAHPMGM---

---PVLCRALEILFILHADHELNCSTAAMRHISSSGTDPYTSVAGAAGALYGPSHGGANE
GRIGYVNSYRFQREYSTIHFRCKEQKEEINGFRS*nlqkl*sksqdhs*ssl*sfrkfr*
rtid*ssh*vgetslgr*ilckqktlskc*fllwshl*sngfpn*yvpsfihystchwlv
sslgrtfrrsrn*nlsstsslqr*mv*klcpnrw*tts*ssfsgsyssattkriqk


Translated Amino Acid sequence (All Frames)
Frame A:
nfiylnt*fifiil*IYIFNMAHIDRINILANHLSKEEEEENELLTSPVSADKKKETVTV
TDNRNGKSYDFKIKNDTINALNFKELQLAKGDGGLMIYDPGFQNTAVVTSYITYIDGDKG
ILRYRGYPIEELAERSNFLEVAYLLINGNLPNKSQLDGWSNKIMTHTFLHENLVGLMKTF
RYDAHPMGM---

---PVLCRALEILFILHADHELNCSTAAMRHISSSGTDPYTSVAGAAGALYGPSHGGANE
GRIGYVNSYRFQREYSTIHFRCKEQKEEINGFRS*nlqkl*sksqdhs*ssl*sfrkfr*
rtid*ssh*vgetslgr*ilckqktlskc*fllwshl*sngfpn*yvpsfihystchwlv
sslgrtfrrsrn*nlsstsslqr*mv*klcpnrw*tts*ssfsgsyssattkriqk

Frame B:
ilyi*ihnlyllfykyifliwhilivliylpiifqrkkkkkmny*lhqfllikkkrqlql
qiiemvkamisklkmtllml*tlknyn*pkvmvv**fmiqvskiqql*hhtlhilmvike
f*dteviqlkn*qkdqtf*rllif*smvtyqinhn*mvgvikl*lilffmkiwlvl*khl
dmmliqwv---

---qfyvvhwkfysffmqimn*ivqplq*difhhqvpihtqvllvplvhymvhlmvvpmr
avldmlihigskenipqfisdvkskkkklmgfghriyknydprakiirrvayevfeslgk
eplievatelekqaledeyfvsrklypnvdfysgliykamgfptdmfpvlftipraigwl
ahwvehledpetkiyrprqvykgewfrnyvpidgrppakvrsqevirllplkefk

Frame C:
fyifeyiiyiyyfiniyf*ygty*sy*ytcqssfkgrrrrk*iinftsfc**kkrdsysy
r**kw*kl*fqn*k*hy*cfkl*ritisqr*wwfndl*srfpkysscniihyiy*w**rn
fkiqrlsn*risrkiklfrgclsfnqw*ltk*itirwle**nydsyfss*kfgwsyeni*
i*cssngy---

---sfmscignfihsscrs*iklfnrcnetyfiiryrsihkccwcrwciiwsiswwcq*g
pywic*fisvpkrifhnsfqm*rakrrn*wvsviestktmiqeprsfve*lmkfskv*vk
nh*lk*plswrnkpwkmntl*aenfiqmlistlvssikqwvsqlicsqfyslfhvplvg*
lig*ni*kiqklksivhvkftkvngletmsqsmvdhqlkfvlrklfvcyh*knsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFJ440 (AFJ440Q) /CSM/AF/AFJ4-B/AFJ440Q.Seq.d/ 2294 0.0
AFK171 (AFK171Q) /CSM/AF/AFK1-C/AFK171Q.Seq.d/ 1350 0.0
AFJ471 (AFJ471Q) /CSM/AF/AFJ4-C/AFJ471Q.Seq.d/ 1346 0.0
AFN717 (AFN717Q) /CSM/AF/AFN7-A/AFN717Q.Seq.d/ 1330 0.0
AFM803 (AFM803Q) /CSM/AF/AFM8-A/AFM803Q.Seq.d/ 1318 0.0
AFJ723 (AFJ723Q) /CSM/AF/AFJ7-A/AFJ723Q.Seq.d/ 1314 0.0
AFI655 (AFI655Q) /CSM/AF/AFI6-C/AFI655Q.Seq.d/ 1289 0.0
SSF821 (SSF821Q) /CSM/SS/SSF8-A/SSF821Q.Seq.d/ 1271 0.0
SSK530 (SSK530Q) /CSM/SS/SSK5-B/SSK530Q.Seq.d/ 1251 0.0
SFC695 (SFC695Q) /CSM/SF/SFC6-D/SFC695Q.Seq.d/ 1191 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY124377|AY124377.1 Dictyostelium discoideum citrate synthase (cshA) mRNA, complete cds. 967 0.0 5
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 80 6e-61 10
AF310892|AF310892.1 Dictyostelium discoideum citrate synthase (gltA) gene, partial cds; RacF2 (racF2) gene, complete cds; and unknown gene. 58 5e-16 3
Z70012|Z70012.1 Bartonella sp. gltA gene (strain N40). 52 2e-12 3
BU044708|BU044708.1 PP_LEa0020E04f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0020E04f, mRNA sequence. 62 3e-10 2
BU040616|BU040616.1 PP_LEa0006L02f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0006L02f, mRNA sequence. 62 3e-10 2
Z70011|Z70011.1 Bartonella sp. gltA gene (strain R-phy2). 52 2e-09 3
Z70022|Z70022.1 Bartonella sp. gltA gene (strain C1phy). 52 2e-09 3
AI895330|AI895330.1 EST264773 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC7M24, mRNA sequence. 46 5e-09 3
CD475400|CD475400.1 nad03-20ms3-b04 Nad03 Nuphar advena cDNA clone nad03-20ms3-b04 5', mRNA sequence. 74 5e-09 1
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000096_332(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 223 5e-77
CP000607_394(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 223 7e-77
AB167269_1(AB167269|pid:none) Chlorobium limicola cit gene for c... 226 2e-76
CP001099_363(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 226 2e-76
CP001110_2246(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 224 3e-76
CP000108_311(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 221 4e-75
CP001101_1989(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 215 1e-72
CP000113_3427(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 209 2e-71
AB190318_2(AB190318|pid:none) Uncultured bacterium bzo32-1, bzo3... 190 5e-65
CP000510_2465(CP000510|pid:none) Psychromonas ingrahamii 37, com... 196 7e-65
protein update 2009. 4.23
PSORT

psg: 0.76 gvh: 0.30 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for AFJ440 is nuc

5' end seq. ID AFJ440F
5' end seq.
>AFJ440F.Seq
AATTTTATATATTTGAATACATAATTTATATTTATTATTTTATAAATATATATTTTTAAT
ATGGCACATATTGATCGTATTAATATACTTGCCAATCATCTTTCAAAGGAAGAAGAAGAA
GAAAATGAATTATTAACTTCACCAGTTTCTGCTGATAAAAAAAAAGAGACAGTTACAGTT
ACAGATAATAGAAATGGTAAAAGCTATGATTTCAAAATTAAAAATGACACTATTAATGCT
TTAAACTTTAAAGAATTACAATTAGCCAAAGGTGATGGTGGTTTAATGATTTATGATCCA
GGTTTCCAAAATACAGCAGTTGTAACATCATACATTACATATATTGATGGTGATAAAGGA
ATTTTAAGATACAGAGGTTATCCAATTGAAGAATTAGCAGAAAGATCAAACTTTTTAGAG
GTTGCTTATCTTTTAATCAATGGTAACTTACCAAATAAATCACAATTAGATGGTTGGAGT
AATAAAATTATGACTCATACTTTTCTTCATGAAAATTTGGTTGGTCTTATGAAAACATTT
AGATATGATGCTCATCCAATGGGTATG----------
Length of 5' end seq. 567
3' end seq. ID AFJ440Z
3' end seq.
>AFJ440Z.Seq
----------CCAGTTTTATGTCGTGCATTGGAAATTTTATTCATTCTTCATGCAGATCA
TGAATTAAATTGTTCAACCGCTGCAATGAGACATATTTCATCATCAGGTACCGATCCATA
CACAAGTGTTGCTGGTGCCGCTGGTGCATTATATGGTCCATCTCATGGTGGTGCCAATGA
GGGCCGTATTGGATATGTTAATTCATATCGGTTCCAAAGAGAATATTCCACAATTCATTT
CAGATGTAAAGAGCAAAAAGAAGAAATTAATGGGTTTCGGTCATAGAATCTACAAAAACT
ATGATCCAAGAGCCAAGATCATTCGTAGAGTAGCTTATGAAGTTTTCGAAAGTTTAGGTA
AAGAACCATTGATTGAAGTAGCCACTGAGTTGGAGAAACAAGCCTTGGAAGATGAATACT
TTGTAAGCAGAAAACTTTATCCAAATGTTGATTTCTACTCTGGTCTCATCTATAAAGCAA
TGGGTTTCCCAACTGATATGTTCCCAGTTTTATTCACTATTCCACGTGCCATTGGTTGGT
TAGCTCATTGGGTAGAACATTTAGAAGATCCAGAAACTAAAATCTATCGTCCACGTCAAG
TTTACAAAGGTGAATGGTTTAGAAACTATGTCCCAATCGATGGTAGACCACCAGCTAAAG
TTCGTTCTCAGGAAGTTATTCGTCTGCTACCACTAAAAGAATTCAAAAA
Length of 3' end seq. 699
Connected seq. ID AFJ440P
Connected seq.
>AFJ440P.Seq
AATTTTATATATTTGAATACATAATTTATATTTATTATTTTATAAATATATATTTTTAAT
ATGGCACATATTGATCGTATTAATATACTTGCCAATCATCTTTCAAAGGAAGAAGAAGAA
GAAAATGAATTATTAACTTCACCAGTTTCTGCTGATAAAAAAAAAGAGACAGTTACAGTT
ACAGATAATAGAAATGGTAAAAGCTATGATTTCAAAATTAAAAATGACACTATTAATGCT
TTAAACTTTAAAGAATTACAATTAGCCAAAGGTGATGGTGGTTTAATGATTTATGATCCA
GGTTTCCAAAATACAGCAGTTGTAACATCATACATTACATATATTGATGGTGATAAAGGA
ATTTTAAGATACAGAGGTTATCCAATTGAAGAATTAGCAGAAAGATCAAACTTTTTAGAG
GTTGCTTATCTTTTAATCAATGGTAACTTACCAAATAAATCACAATTAGATGGTTGGAGT
AATAAAATTATGACTCATACTTTTCTTCATGAAAATTTGGTTGGTCTTATGAAAACATTT
AGATATGATGCTCATCCAATGGGTATG----------CCAGTTTTATGTCGTGCATTGGA
AATTTTATTCATTCTTCATGCAGATCATGAATTAAATTGTTCAACCGCTGCAATGAGACA
TATTTCATCATCAGGTACCGATCCATACACAAGTGTTGCTGGTGCCGCTGGTGCATTATA
TGGTCCATCTCATGGTGGTGCCAATGAGGGCCGTATTGGATATGTTAATTCATATCGGTT
CCAAAGAGAATATTCCACAATTCATTTCAGATGTAAAGAGCAAAAAGAAGAAATTAATGG
GTTTCGGTCATAGAATCTACAAAAACTATGATCCAAGAGCCAAGATCATTCGTAGAGTAG
CTTATGAAGTTTTCGAAAGTTTAGGTAAAGAACCATTGATTGAAGTAGCCACTGAGTTGG
AGAAACAAGCCTTGGAAGATGAATACTTTGTAAGCAGAAAACTTTATCCAAATGTTGATT
TCTACTCTGGTCTCATCTATAAAGCAATGGGTTTCCCAACTGATATGTTCCCAGTTTTAT
TCACTATTCCACGTGCCATTGGTTGGTTAGCTCATTGGGTAGAACATTTAGAAGATCCAG
AAACTAAAATCTATCGTCCACGTCAAGTTTACAAAGGTGAATGGTTTAGAAACTATGTCC
CAATCGATGGTAGACCACCAGCTAAAGTTCGTTCTCAGGAAGTTATTCGTCTGCTACCAC
TAAAAGAATTCAAAAA
Length of connected seq. 1266
Full length Seq ID -
Full length Seq. -
Length of full length seq. -