SHG618
Library SH
(Link to library)
Clone ID SHG618
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15779-1
Original site URL
Representative seq. ID SHG618P
(Link to Original site)
Representative DNA sequence
>SHG618 (SHG618Q) /CSM/SH/SHG6-A/SHG618Q.Seq.d/
AAAAAGACATTGTTTTATTTTTATTTATTTTTATTGTTTTTATCTATACTTTATTTTTGA
TTTTATTTTTATTTCATTTAAAAATTAAGATTAAATATTTAATATCTAATATTTATTTTT
TTCATATTAACCACTAATTTATAGACAATTTTTTTTTTTTTCNTTAAAAAAAANAAAAAA
ACCCCTCCCAAAAAAAAANCCAAAAAAAAAAAAAATTTTNANNNTTTTTTTTTTAAAAAA
NTTNANNAAAAAAXXXXXXXXXXCTCTCTCAAACCATTGGACCATTGATTAAAAAGATTT
ACTCATCAAAAAAGTCTTGTGAAATTGATCCAACCAAATTGGAGAAGGGTGAGGATATTA
AAAAGAATTGTAAGAATCTTTTAAGTTGGGTTAAAAAGATGACTACTGCTATCCTCTCTA
GTGTAAATAATTGTCCTGGCCCATTGAGAGAGGTATTCAAATCCATTCAAGATAAAGTGG
TTCAACGTTATCCAAAGGATGAAATCACACGTTATACAGCCGTAAGTGGTTTCATTTTCC
TTCGTTTCTTTTGTCCTGCAATTTTAGCTCCAAAACTTTTCGATCTAATGCCAGATCATC
CAGGCATTAAAACTACTCGTTCTCTCATTCTTATTGCAAAAACCTTACAAAATTTGGCAA
ATCAAGTAGAATTTGGTGAATACAAAGAAGACTTTATGAAAGATATGAATCGTTTCGTAA
TTGATAATATGGAAAATATGAAATCATTCATTAATACTCTTTCAACAGTTCCTGCTGATT
GTCCACCTGGTGCTTTACAATCACCAATCATACTGGAAAAAGAATTGGCTTGTCTATATC
GTCATTTAATTAAACAACGTCAAGATATGGCTGAAGAAATGGAGTCAACTGAATCTGAAC
CAAAAACTCAACAAGAAAAAGATTCTTTTGGAAAATTAATTAAA
sequence update 2002.10.25
Translated Amino Acid sequence
krhcfifiyfycfylyfifdfifisfkn*d*ifni*ylffsy*PLIYRQFFFFSLKKXKK
PLPKKXPKKKKIXXXFFLKXXXKK---

---LSQTIGPLIKKIYSSKKSCEIDPTKLEKGEDIKKNCKNLLSWVKKMTTAILSSVNNC
PGPLREVFKSIQDKVVQRYPKDEITRYTAVSGFIFLRFFCPAILAPKLFDLMPDHPGIKT
TRSLILIAKTLQNLANQVEFGEYKEDFMKDMNRFVIDNMENMKSFINTLSTVPADCPPGA
LQSPIILEKELACLYRHLIKQRQDMAEEMESTESEPKTQQEKDSFGKLIK


Translated Amino Acid sequence (All Frames)
Frame A:
kktlfyfylfllflsilyf*fyfyfi*klrlni*ylififfilttnl*tiffffxkkxkk
tppkkkxkkkknfxxfffkkxxxk---

---LSQTIGPLIKKIYSSKKSCEIDPTKLEKGEDIKKNCKNLLSWVKKMTTAILSSVNNC
PGPLREVFKSIQDKVVQRYPKDEITRYTAVSGFIFLRFFCPAILAPKLFDLMPDHPGIKT
TRSLILIAKTLQNLANQVEFGEYKEDFMKDMNRFVIDNMENMKSFINTLSTVPADCPPGA
LQSPIILEKELACLYRHLIKQRQDMAEEMESTESEPKTQQEKDSFGKLIK

Frame B:
krhcfifiyfycfylyfifdfifisfkn*d*ifni*ylffsy*PLIYRQFFFFSLKKXKK
PLPKKXPKKKKIXXXFFLKXXXKK---

---slkpldh*lkrfthqkslvkliqpnwrrvrilkrivrif*vglkr*lllsslv*iiv
lah*erysnpfkikwfnviqrmkshviqp*vvsfsfvsfvlqf*lqnfsi*cqiiqalkl
lvlsfllqkpykiwqik*nlvntkktl*ki*ivs*liiwki*nhslilfqqfllivhlvl
ynhqsywkknwlvyivi*lnnvkiwlkkwsqlnlnqklnkkkillen*l

Frame C:
kdivlflfifivfiytlflilflfhlkikikylisniyffhinh*fidnffffx*kkxkn
psqkkxqkkkkfxxfff*kxxxk---

---lsnhwtid*kdllikkvl*n*snqigeg*gy*kel*esfklg*kddycypl*ck*ls
wpiergiqihsr*sgstlskg*nhtlysrkwfhfpsfllscnfssktfrsnarssrh*ny
sfshsycknltkfgkssriw*iqrrlyeryesfrn**ygkyeiih*ysfnssc*lstwcf
titnhtgkriglsissfn*ttsryg*rngvn*i*tknstrkrffwkin*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHG618 (SHG618Q) /CSM/SH/SHG6-A/SHG618Q.Seq.d/ 1350 0.0
AHM528 (AHM528Q) /CSM/AH/AHM5-B/AHM528Q.Seq.d/ 1350 0.0
VHK224 (VHK224Q) /CSM/VH/VHK2-A/VHK224Q.Seq.d/ 1344 0.0
SHA252 (SHA252Q) /CSM/SH/SHA2-C/SHA252Q.Seq.d/ 1342 0.0
AHE512 (AHE512Q) /CSM/AH/AHE5-A/AHE512Q.Seq.d/ 1340 0.0
AHI639 (AHI639Q) /CSM/AH/AHI6-B/AHI639Q.Seq.d/ 1314 0.0
CHI471 (CHI471Q) /CSM/CH/CHI4-C/CHI471Q.Seq.d/ 1243 0.0
CFJ181 (CFJ181Q) /CSM/CF/CFJ1-D/CFJ181Q.Seq.d/ 1229 0.0
CHL838 (CHL838Q) /CSM/CH/CHL8-B/CHL838Q.Seq.d/ 1201 0.0
SHC526 (SHC526Q) /CSM/SH/SHC5-B/SHC526Q.Seq.d/ 1148 0.0

own update 2004. 7.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CG389607|CG389607.1 ZMMBBc0573A09r ZMMBBc Zea mays genomic clone ZMMBBc0573A09 3',genomic survey sequence. 50 0.093 1
AJ756401|AJ756401.1 Gerbera hybrid cv. 'Terra Regina' EST, clone G0000300003H02F1. 44 0.22 2
CR354590|CR354590.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 42 0.76 4
AL160278|AL160278.24 Human DNA sequence from clone RP11-574G7 on chromosome 9. 38 4.6 3
AL592504|AL592504.6 Human DNA sequence from clone RP11-320J16 on chromosome X. Contains STSs and GSSs. 40 5.3 5
CD453775|CD453775.1 WHE2108_D02_H04ZT CS wheat salt-stressed crown cDNA library Triticum aestivum cDNA clone WHE2108_D02_H04, mRNA sequence. 44 5.7 1
BJ252255|BJ252255.1 Triticum aestivum cDNA clone:whf22g24, 3' end, single read. 44 5.7 1
CA743719|CA743719.1 wri1s.pk005.b22 wri1s Triticum aestivum cDNA clone wri1s.pk005.b22 5' end, mRNA sequence. 44 5.7 1
CD923430|CD923430.1 G750.108G22F010530 G750 Triticum aestivum cDNA clone G750108G22, mRNA sequence. 44 5.7 1
BQ487459|BQ487459.1 WHE2108_D02_H04ZY Wheat salt-stressed crown cDNA library Triticum aestivum cDNA clone WHE2108_D02_H04, mRNA sequence. 44 5.7 1
dna update 2006. 4. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270115_10(AM270115|pid:none) Aspergillus niger contig An06c009... 147 4e-34
AM920437_405(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 141 3e-32
CR858268_1(CR858268|pid:none) Pongo abelii mRNA; cDNA DKFZp469B2... 139 1e-31
BX470189_3(BX470189|pid:none) Zebrafish DNA sequence from clone ... 139 2e-31
AK300269_1(AK300269|pid:none) Homo sapiens cDNA FLJ61389 complet... 138 2e-31
(P20936) RecName: Full=Ras GTPase-activating protein 1; ... 138 2e-31
AK312739_1(AK312739|pid:none) Homo sapiens cDNA, FLJ93145, Homo ... 138 2e-31
AK161497_1(AK161497|pid:none) Mus musculus adult male testis cDN... 138 3e-31
AK133354_1(AK133354|pid:none) Mus musculus adult male testis cDN... 138 3e-31
(P09851) RecName: Full=Ras GTPase-activating protein 1; ... 134 6e-30
protein update 2009. 4.19
PSORT

psg: 0.81 gvh: 0.35 alm: 0.30 top: 0.53 tms: 0.07 mit: 0.43 mip: 0.02
nuc: 0.21 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: mitochondrial
20.0 %: nuclear
12.0 %: Golgi
12.0 %: cytoplasmic
12.0 %: endoplasmic reticulum
4.0 %: vacuolar

>> prediction for SHG618 is mit

5' end seq. ID SHG618F
5' end seq.
>SHG618F.Seq
AAAAAGACATTGTTTTATTTTTATTTATTTTTATTGTTTTTATCTATACTTTATTTTTGA
TTTTATTTTTATTTCATTTAAAAATTAAGATTAAATATTTAATATCTAATATTTATTTTT
TTCATATTAACCACTAATTTATAGACAATTTTTTTTTTTTTCNTTAAAAAAAANAAAAAA
ACCCCTCCCAAAAAAAAANCCAAAAAAAAAAAAAATTTTNANNNTTTTTTTTTTAAAAAA
NTTNANNAAAAAANNNNNNNNNN
Length of 5' end seq. 263
3' end seq. ID SHG618Z
3' end seq.
>SHG618Z.Seq
NNNNNNNNNNCTCTCTCAAACCATTGGACCATTGATTAAAAAGATTTACTCATCAAAAAA
GTCTTGTGAAATTGATCCAACCAAATTGGAGAAGGGTGAGGATATTAAAAAGAATTGTAA
GAATCTTTTAAGTTGGGTTAAAAAGATGACTACTGCTATCCTCTCTAGTGTAAATAATTG
TCCTGGCCCATTGAGAGAGGTATTCAAATCCATTCAAGATAAAGTGGTTCAACGTTATCC
AAAGGATGAAATCACACGTTATACAGCCGTAAGTGGTTTCATTTTCCTTCGTTTCTTTTG
TCCTGCAATTTTAGCTCCAAAACTTTTCGATCTAATGCCAGATCATCCAGGCATTAAAAC
TACTCGTTCTCTCATTCTTATTGCAAAAACCTTACAAAATTTGGCAAATCAAGTAGAATT
TGGTGAATACAAAGAAGACTTTATGAAAGATATGAATCGTTTCGTAATTGATAATATGGA
AAATATGAAATCATTCATTAATACTCTTTCAACAGTTCCTGCTGATTGTCCACCTGGTGC
TTTACAATCACCAATCATACTGGAAAAAGAATTGGCTTGTCTATATCGTCATTTAATTAA
ACAACGTCAAGATATGGCTGAAGAAATGGAGTCAACTGAATCTGAACCAAAAACTCAACA
AGAAAAAGATTCTTTTGGAAAATTAATTAAA
Length of 3' end seq. 691
Connected seq. ID SHG618P
Connected seq.
>SHG618P.Seq
AAAAAGACATTGTTTTATTTTTATTTATTTTTATTGTTTTTATCTATACTTTATTTTTGA
TTTTATTTTTATTTCATTTAAAAATTAAGATTAAATATTTAATATCTAATATTTATTTTT
TTCATATTAACCACTAATTTATAGACAATTTTTTTTTTTTTCNTTAAAAAAAANAAAAAA
ACCCCTCCCAAAAAAAAANCCAAAAAAAAAAAAAATTTTNANNNTTTTTTTTTTAAAAAA
NTTNANNAAAAAA----------CTCTCTCAAACCATTGGACCATTGATTAAAAAGATTT
ACTCATCAAAAAAGTCTTGTGAAATTGATCCAACCAAATTGGAGAAGGGTGAGGATATTA
AAAAGAATTGTAAGAATCTTTTAAGTTGGGTTAAAAAGATGACTACTGCTATCCTCTCTA
GTGTAAATAATTGTCCTGGCCCATTGAGAGAGGTATTCAAATCCATTCAAGATAAAGTGG
TTCAACGTTATCCAAAGGATGAAATCACACGTTATACAGCCGTAAGTGGTTTCATTTTCC
TTCGTTTCTTTTGTCCTGCAATTTTAGCTCCAAAACTTTTCGATCTAATGCCAGATCATC
CAGGCATTAAAACTACTCGTTCTCTCATTCTTATTGCAAAAACCTTACAAAATTTGGCAA
ATCAAGTAGAATTTGGTGAATACAAAGAAGACTTTATGAAAGATATGAATCGTTTCGTAA
TTGATAATATGGAAAATATGAAATCATTCATTAATACTCTTTCAACAGTTCCTGCTGATT
GTCCACCTGGTGCTTTACAATCACCAATCATACTGGAAAAAGAATTGGCTTGTCTATATC
GTCATTTAATTAAACAACGTCAAGATATGGCTGAAGAAATGGAGTCAACTGAATCTGAAC
CAAAAACTCAACAAGAAAAAGATTCTTTTGGAAAATTAATTAAA
Length of connected seq. 934
Full length Seq ID -
Full length Seq. -
Length of full length seq. -