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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG607
Library SH
(Link to library)
Clone ID SHG607
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID SHG607P
(Link to Original site)
Representative DNA sequence 
>SHG607 (SHG607Q) /CSM/SH/SHG6-A/SHG607Q.Seq.d/
ATTTAAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAAAATTCATATC
ACATTATNGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACNCTCTATCAT
TTAATTTTAATAAAAAAAAAAXXXXXXXXXXTATATGTCTGTCTTGATCATCTTAAAATG
GGTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACCATTCATTCTTCCAAC
CATTATCGCTATGTTCTTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTCTCTGGTCA
AGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGT
CATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGG
TCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATT
TGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGC
TGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTT
ATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTT
GGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTNTTACTTATGGA
ATCCCTTTCTGCNTTCTTGCACGCTCTTAGACTTCATTGGGTAGNATTCCANAATAAATT
CTATATTGGTGATGGTGTTAGATTCATTCCATACAGNGCCACTCG
sequence update 2002.10.25
Translated Amino Acid sequence 
lkkk*ri*lyi*htkknsyhixvfh*FINNNIYIINXLSFNFNKKK---

---YMSVLIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTAL
LFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGA
WLGASVAVLLLMESLSAFLHALRLHWVXFXNKFYIGDGVRFIPYXAT
Translated Amino Acid sequence (All Frames) 
Frame A:
i*kknreysyiyntqkkihitlxffinl*tiiyi**tlyhlilikkk---

---YMSVLIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTAL
LFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFV
HQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGA
WLGASVAVLLLMESLSAFLHALRLHWVXFXNKFYIGDGVRFIPYXAT

Frame B:
fkkkieniviyithkkkfishyxfsliykq*yiynkxsii*f**kk---

---icls*ss*ngsfhivhlrltklihhsffqplslcschqvvhqmlssslvkvlfkpls
yswlsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslf
iksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvl
g*vplllyxylwnpflxsctlldfig*xsxinsilvmvldsfhtxpl

Frame C:
lkkk*ri*lyi*htkknsyhixvfh*FINNNIYIINXLSFNFNKKK---

---yvcldhlkmgrsisfi*g*qs*stihssnhyryvlvtrwytrcclllwsrccsnrsl
ilgshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcs
sshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwcl
vrclccctxtygipfcxlars*tslgxipx*ilyw*wc*ihsiqxhs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG607 (SHG607Q) /CSM/SH/SHG6-A/SHG607Q.Seq.d/                       1306   0.0
CHL154 (CHL154Q) /CSM/CH/CHL1-C/CHL154Q.Seq.d/                       1306   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1291   0.0
VHQ150 (VHQ150Q) /CSM/VH/VHQ1-C/VHQ150Q.Seq.d/                       1289   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                       1289   0.0
AFB674 (AFB674Q) /CSM/AF/AFB6-D/AFB674Q.Seq.d/                       1289   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1287   0.0
SHA788 (SHA788Q) /CSM/SH/SHA7-D/SHA788Q.Seq.d/                       1287   0.0
AHO682 (AHO682Q) /CSM/AH/AHO6-D/AHO682Q.Seq.d/                       1287   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1285   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1306   0.0    1
DY983049|DY983049.1 CLSS5348.b1_H18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS5348, mRNA sequence.    80   9e-11  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   9e-11  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   9e-11  1
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   6e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   1e-08  3
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   2e-08  1
DT466948|DT466948.1 GH_CHX19K13.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX19K13 5', mRNA sequence.    72   2e-08  1
DT457612|DT457612.1 GH_ON34M24.r GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 3', mRNA sequence.    72   2e-08  1
DT457611|DT457611.1 GH_ON34M24.f GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 5', mRNA sequence.    72   2e-08  1
dna update 2006. 4. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   446   e-124
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   446   e-124
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   209   8e-53
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   208   1e-52
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   203   6e-51
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   203   6e-51
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   203   6e-51
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   202   1e-50
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   202   1e-50
AM494960_175(AM494960|pid:none) Leishmania braziliensis chromoso...   200   5e-50
protein update 2009. 4.19
PSORT 

 psg: 0.84  gvh: 0.45  alm: 0.18  top: 0.77  tms: 0.20  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SHG607 is end
5' end seq. ID SHG607F
5' end seq. 
>SHG607F.Seq
ATTTAAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAAAATTCATATC
ACATTATNGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACNCTCTATCAT
TTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 151
3' end seq. ID SHG607Z
3' end seq. 
>SHG607Z.Seq
NNNNNNNNNNTATATGTCTGTCTTGATCATCTTAAAATGGGTCGTTCCATATCGTTCATT
TGAGGTTGACAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTC
ACCAGGTGGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCT
CTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAA
GAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGA
TGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGT
TCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTA
TCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACG
TATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGC
TTGGTTAGGTGCCTCTGTTGCTGTACTNTTACTTATGGAATCCCTTTCTGCNTTCTTGCA
CGCTCTTAGACTTCATTGGGTAGNATTCCANAATAAATTCTATATTGGTGATGGTGTTAG
ATTCATTCCATACAGNGCCACTCG
Length of 3' end seq. 684
Connected seq. ID SHG607P
Connected seq. 
>SHG607P.Seq
ATTTAAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAAAATTCATATC
ACATTATNGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACNCTCTATCAT
TTAATTTTAATAAAAAAAAAA----------TATATGTCTGTCTTGATCATCTTAAAATG
GGTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACCATTCATTCTTCCAAC
CATTATCGCTATGTTCTTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTCTCTGGTCA
AGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGT
CATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGG
TCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATT
TGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGC
TGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTT
ATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTT
GGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTNTTACTTATGGA
ATCCCTTTCTGCNTTCTTGCACGCTCTTAGACTTCATTGGGTAGNATTCCANAATAAATT
CTATATTGGTGATGGTGTTAGATTCATTCCATACAGNGCCACTCG
Length of connected seq. 815
Full length Seq ID -
Full length Seq. -
Length of full length seq. -