SHG602
Library SH
(Link to library)
Clone ID SHG602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID SHG602P
(Link to Original site)
Representative DNA sequence
>SHG602 (SHG602Q) /CSM/SH/SHG6-A/SHG602Q.Seq.d/
AATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATT
TCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAAXXXXX
XXXXXCCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTTGTC
TTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATA
CTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTG
GTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAA
TTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTG
GTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTC
ATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAG
GAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTT
TAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAA
ACCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAA
sequence update 2002.10.25
Translated Amino Acid sequence
iiip*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKRKKK---

---PSDDACNLQVCSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVS
IGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRAT
GHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMV
KNPNFISSKHSCYGESCC


Translated Amino Acid sequence (All Frames)
Frame A:
nnyplk**q*nrflhlflfisylfllekkekkekkkkk---

---PSDDACNLQVCSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVS
IGGTIPPTTTGVSQVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRAT
GHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMV
KNPNFISSKHSCYGESCC

Frame B:
iiip*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKRKKK---

---hqmmhviykyvlkleivvlqwf*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfq
lvelslqpllvyhklsvivvqlvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglq
vitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwl
ktqisflvnivvmvnhvv

Frame C:
*lslkiitik*iftfifiyfififvgkkrkkrkkekk---

---ir*cm*ftsmf*nwr*lsyngfkl****rly*r*vfkywylsk*sn*rlcytitsfn
wwnypsnhywcits*v*llsnwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyr
slhriryr*stfm**isl*krngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*
kpkfhf**t*llw*iml*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHG602 (SHG602Q) /CSM/SH/SHG6-A/SHG602Q.Seq.d/ 1164 0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/ 1156 0.0
SHG887 (SHG887Q) /CSM/SH/SHG8-D/SHG887Q.Seq.d/ 1156 0.0
SHG844 (SHG844Q) /CSM/SH/SHG8-B/SHG844Q.Seq.d/ 1156 0.0
SHF242 (SHF242Q) /CSM/SH/SHF2-B/SHF242Q.Seq.d/ 1156 0.0
SHD609 (SHD609Q) /CSM/SH/SHD6-A/SHD609Q.Seq.d/ 1156 0.0
SHD521 (SHD521Q) /CSM/SH/SHD5-A/SHD521Q.Seq.d/ 1156 0.0
SHC486 (SHC486Q) /CSM/SH/SHC4-D/SHC486Q.Seq.d/ 1156 0.0
SHC464 (SHC464Q) /CSM/SH/SHC4-C/SHC464Q.Seq.d/ 1156 0.0
SHB522 (SHB522Q) /CSM/SH/SHB5-A/SHB522Q.Seq.d/ 1156 0.0

own update 2003. 6. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CR936281|CR936281.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 50 0.070 1
CR385071|CR385071.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-245B7. 50 0.070 1
DT056953|DT056953.1 AGENCOURT_55789447 NICHD_XGC_FaBN Xenopus laevis cDNA clone IMAGE:8075049 3', mRNA sequence. 32 0.22 3
CR394540|CR394540.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-10E10. 34 0.39 5
AX348725|AX348725.1 Sequence 183 from Patent WO0202807. 46 1.1 1
AX344318|AX344318.1 Sequence 165 from Patent WO0200926. 46 1.1 1
AX251922|AX251922.1 Sequence 183 from Patent WO0168911. 46 1.1 1
BD452308|BD452308.1 Diagnosis of Diseases Associated with Cell Cycle. 46 1.1 1
BD460386|BD460386.1 Diagnosis of Diseases Associated with Cell Cycle. 46 1.1 1
AC149417|AC149417.1 Phakopsora pachyrhizi clone JGIAFNA-77J13, complete sequence. 46 1.1 1
dna update 2006. 4. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 367 e-100
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 201 2e-50
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 52 2e-05
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 47 5e-04
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 44 0.004
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 44 0.004
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 44 0.004
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 44 0.005
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 42 0.013
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 41 0.030
protein update 2009. 4.19
PSORT

psg: 0.91 gvh: 0.33 alm: 0.47 top: 0.43 tms: 0.00 mit: 0.20 mip: 0.06
nuc: 0.39 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
8.0 %: plasma membrane
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SHG602 is nuc

5' end seq. ID SHG602F
5' end seq.
>SHG602F.Seq
AATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATT
TCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 125
3' end seq. ID SHG602Z
3' end seq.
>SHG602Z.Seq
NNNNNNNNNNCCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAG
TTGTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTT
AAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTC
AATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTG
TCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAAC
CACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTAC
AGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAA
AAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAA
ATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGT
TAAAAACCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAA
Length of 3' end seq. 597
Connected seq. ID SHG602P
Connected seq.
>SHG602P.Seq
AATAATTATCCCTTAAAATAATAACAATAAAATAGATTTTTACATTTATTTTTATTTATT
TCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAAAGAAAAAAAAAA-----
-----CCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTTGTC
TTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATA
CTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTG
GTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAA
TTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTG
GTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTC
ATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAG
GAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTT
TAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAA
ACCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAA
Length of connected seq. 702
Full length Seq ID -
Full length Seq. -
Length of full length seq. -