SHG578
Library SH
(Link to library)
Clone ID SHG578
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHG578P
(Link to Original site)
Representative DNA sequence
>SHG578 (SHG578Q) /CSM/SH/SHG5-D/SHG578Q.Seq.d/
ATGTATATTTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAAT
ATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTA
TTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGAT
CAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAAATTCAAATAAAAATGCATTGTAT
GATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTAT
AAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTNCATTTATATATGATGGA
TTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAANATTATTACTTTGAA
ACCTATGAAAANACATTGGCTTGTCCAXXXXXXXXXXCTCATCCAAANACAAANANTGAN
GCTTTNTTATCAACTGTTGANAANGNTTANGTCNCTTCTTTTACTTCTTCTGANGCTGGT
GGNTATTATTTTAANGGTTGTTCNTTTGGNATTATTCCAAAAAAATAAAATAATAAAAAA
ATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAANATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAAAATATTATTAAAAATAAAAAAAAAA
AAGAA
sequence update 2002.10.25
Translated Amino Acid sequence
myifflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYD
QRILALKGKCYLNSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGXFIYDG
LTQRTTYEFTFTNPKXYYFETYEXTLACP---

---LIQXQXXXLXYQLLXXXXSLLLLLLXLVXIILXVVXLXLFQKNKIIKKYK*ikk*kn
k*knk*kxk*ink*ink*ink*kyy*k*kkkr


Translated Amino Acid sequence (All Frames)
Frame A:
myifflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYD
QRILALKGKCYLNSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGXFIYDG
LTQRTTYEFTFTNPKXYYFETYEXTLACP---

---LIQXQXXXLXYQLLXXXXSLLLLLLXLVXIILXVVXLXLFQKNKIIKKYK*ikk*kn
k*knk*kxk*ink*ink*ink*kyy*k*kkkr

Frame B:
cifffcllknfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkymi
nvfwh*kenvi*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd
*lnvqlmnlhlpiqxiitlkpmkxhwlv---

---sskxkx*xfxinc*xxlxxffyff*xwwxlf*xlfxwxyskkik**knink*knkki
nkkinkxink*ink*ink*inkniiknkkkke

Frame C:
vyfffvy*kiliivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*s
tyfgikrkmlfkfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wxiyi*wi
nstynl*iyiyqskxlll*nl*kxigls---

---hpxtxxxaxlstvxxxxvxsftssxaggyyfxgcsfgiipkk*nnkki*inkkikk*
ikk*ikx*ink*ink*ink*ikillkikkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHG578 (SHG578Q) /CSM/SH/SHG5-D/SHG578Q.Seq.d/ 700 0.0
SHK766 (SHK766Q) /CSM/SH/SHK7-C/SHK766Q.Seq.d/ 589 e-167
SHF745 (SHF745Q) /CSM/SH/SHF7-B/SHF745Q.Seq.d/ 589 e-167
SHD532 (SHD532Q) /CSM/SH/SHD5-B/SHD532Q.Seq.d/ 589 e-167
SHF484 (SHF484Q) /CSM/SH/SHF4-D/SHF484Q.Seq.d/ 587 e-167
SHL516 (SHL516Q) /CSM/SH/SHL5-A/SHL516Q.Seq.d/ 583 e-165
SHL138 (SHL138Q) /CSM/SH/SHL1-B/SHL138Q.Seq.d/ 583 e-165
SHJ876 (SHJ876Q) /CSM/SH/SHJ8-D/SHJ876Q.Seq.d/ 583 e-165
SHI450 (SHI450Q) /CSM/SH/SHI4-C/SHI450Q.Seq.d/ 583 e-165
SHI363 (SHI363Q) /CSM/SH/SHI3-C/SHI363Q.Seq.d/ 583 e-165

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC090899|AC090899.3 Mus musculus clone RP23-25N5, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces. 38 0.61 2
DU889256|DU889256.1 387271 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0206N21 3, genomic survey sequence. 46 1.1 1
AC005213|AC005213.1 Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete sequence. 46 1.1 1
AC005188|AC005188.1 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence. 46 1.1 1
AC162924|AC162924.5 Mus musculus BAC clone RP23-292J21 from chromosome 6, complete sequence. 38 1.8 2
AW871630|AW871630.1 ra80c01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence. 44 4.4 1
AW871214|AW871214.1 ra56d01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence. 44 4.4 1
AW829376|AW829376.1 ra39d01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence. 44 4.4 1
BI742812|BI742812.1 kx35c12.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5', mRNA sequence. 44 4.4 1
AV984767|AV984767.1 Ciona intestinalis cDNA, clone:cilv38i14, 5' end, single read. 44 4.4 1
dna update 2006. 4. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,... 47 7e-04
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 43 0.011
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 40 0.069
CP000830_3576(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 36 1.3
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 35 1.7
CP000804_904(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 34 3.8
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 34 3.8
AM263198_431(AM263198|pid:none) Listeria welshimeri serovar 6b s... 33 6.4
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 33 6.4

protein update 2009. 4.19
PSORT

psg: 0.95 gvh: 0.59 alm: 0.14 top: 0.47 tms: 0.13 mit: 0.31 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: nuclear
4.0 %: vacuolar

>> prediction for SHG578 is end

5' end seq. ID SHG578F
5' end seq.
>SHG578F.Seq
ATGTATATTTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAAT
ATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTA
TTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGAT
CAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAAATTCAAATAAAAATGCATTGTAT
GATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTAT
AAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTNCATTTATATATGATGGA
TTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAANATTATTACTTTGAA
ACCTATGAAAANACATTGGCTTGTCCANNNNNNNNNN
Length of 5' end seq. 457
3' end seq. ID SHG578Z
3' end seq.
>SHG578Z.Seq
NNNNNNNNNNCTCATCCAAANACAAANANTGANGCTTTNTTATCAACTGTTGANAANGNT
TANGTCNCTTCTTTTACTTCTTCTGANGCTGGTGGNTATTATTTTAANGGTTGTTCNTTT
GGNATTATTCCAAAAAAATAAAATAATAAAAAAATATAAATAAATAAAAAAATAAAAAAA
TAAATAAAAAAATAAATAAAAANATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAAAATATTATTAAAAATAAAAAAAAAAAAGAA
Length of 3' end seq. 278
Connected seq. ID SHG578P
Connected seq.
>SHG578P.Seq
ATGTATATTTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAAT
ATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTA
TTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGAT
CAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAAATTCAAATAAAAATGCATTGTAT
GATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTAT
AAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTNCATTTATATATGATGGA
TTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAANATTATTACTTTGAA
ACCTATGAAAANACATTGGCTTGTCCA----------CTCATCCAAANACAAANANTGAN
GCTTTNTTATCAACTGTTGANAANGNTTANGTCNCTTCTTTTACTTCTTCTGANGCTGGT
GGNTATTATTTTAANGGTTGTTCNTTTGGNATTATTCCAAAAAAATAAAATAATAAAAAA
ATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAANATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAAAATATTATTAAAAATAAAAAAAAAA
AAGAA
Length of connected seq. 715
Full length Seq ID -
Full length Seq. -
Length of full length seq. -