>AFJ432 (AFJ432Q) /CSM/AF/AFJ4-B/AFJ432Q.Seq.d/
CAACCATCAACAACCTCAACTTCAACAAACTCAACAGTAACCTCAACTTCAACAACATCA
CAGATTAGAGATAATAAATATTTATCAAAAACTCCAATTAATAATGAACCAATTAAAATA
TTATCAAAACAATTAAAATTTCAAAACTATGAAACTGTATATAATATATTAAGTAGATCT
AATACCCAATTCACTGTTATAGGTGTAATTGGTGGTCAATCTTGTGGTAAATCTACATTA
CTATCATCTTTAATTAAAAGATCACATGATAATAGTCAAACTCAACAACAGCAACAACAA
ACGAATGATTCAACAACAACAACAACAACAACATCAAATACTACTTCAACTACTACAACA
CCATCATCATCATCATCAACAACAACAGTATCAAATAATAATGCAAAATTATTTGAAATT
CAAACTGATAATAACTTTGGATTAGGTAAACATCAAACAATTGGTATTGATTTATTTGTA
TCAGAAGAAGAGAGGATTATTTATTTAGATACTCAACCACTTCAAAGTTTATCAATTATT
TGTGAAATGATTGAAGACAATTTTCATTTACCCAATCAATTCAACTCATATGAACAATAT
CATCATATGCAATGNTTXXXXXXXXXX

QPSTTSTSTNSTVTSTSTTSQIRDNKYLSKTPINNEPIKILSKQLKFQNYETVYNILSRS
NTQFTVIGVIGGQSCGKSTLLSSLIKRSHDNSQTQQQQQQTNDSTTTTTTTSNTTSTTTT
PSSSSSTTTVSNNNAKLFEIQTDNNFGLGKHQTIGIDLFVSEEERIIYLDTQPLQSLSII
CEMIEDNFHLPNQFNSYEQYHHMQX---

Frame A:
QPSTTSTSTNSTVTSTSTTSQIRDNKYLSKTPINNEPIKILSKQLKFQNYETVYNILSRS
NTQFTVIGVIGGQSCGKSTLLSSLIKRSHDNSQTQQQQQQTNDSTTTTTTTSNTTSTTTT
PSSSSSTTTVSNNNAKLFEIQTDNNFGLGKHQTIGIDLFVSEEERIIYLDTQPLQSLSII
CEMIEDNFHLPNQFNSYEQYHHMQX---


Frame B:
nhqqpqlqqtqq*pqlqqhhrleiiniyqklqlimnqlkyyqnn*nfktmklyiiy*vdl
ipnsll*v*lvvnlvvnlhyyhl*lkdhmiivklnnsnnkrmiqqqqqqqhqillqllqh
hhhhhqqqqyqiimqnylkfkliitld*vnikqlvliylyqkkrglfi*ilnhfkvyqlf
vk*lktifiypinsthmnniiicnx---


Frame C:
tinnlnfnklnsnlnfnnitd*r**ifiknsn***tn*niiktikiskl*nci*yik*i*
ypihcyrcnwwsilw*iyitiifn*kit***snsttattne*fnnnnnnnikyyfnyynt
iiiiinnnsik**ckii*nsn***lwir*tsnnwy*ficirrredylfrysttskfinyl
*nd*rqfsftqsiqli*tissyam---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFJ432 (AFJ432Q) /CSM/AF/AFJ4-B/AFJ432Q.Seq.d/                        468   e-131
AHE201 (AHE201Q) /CSM/AH/AHE2-A/AHE201Q.Seq.d/                        404   e-112
AFL378 (AFL378Q) /CSM/AF/AFL3-D/AFL378Q.Seq.d/                        353   2e-96
VSK117 (VSK117Q) /CSM/VS/VSK1-A/VSK117Q.Seq.d/                         38   0.16
VSI688 (VSI688Q) /CSM/VS/VSI6-D/VSI688Q.Seq.d/                         38   0.16
SSL511 (SSL511Q) /CSM/SS/SSL5-A/SSL511Q.Seq.d/                         38   0.16
SSB602 (SSB602Q) /CSM/SS/SSB6-A/SSB602Q.Seq.d/                         38   0.16
SHC226 (SHC226Q) /CSM/SH/SHC2-B/SHC226Q.Seq.d/                         38   0.16
AHE641 (AHE641Q) /CSM/AH/AHE6-B/AHE641Q.Seq.d/                         38   0.16
VSG675 (VSG675Q) /CSM/VS/VSG6-D/VSG675Q.Seq.d/                         36   0.62

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    52  3e-04  9
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32  0.002  9
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    40  0.027  9
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          52  0.073  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.082  11
AY077834|AY077834.1 Sheeppox virus strain NISKHI, complete genome.    36  0.12  9
AY077832|AY077832.1 Sheeppox virus strain TU-V02127, complete genome.    36  0.12  9
AY077833|AY077833.1 Sheeppox virus strain A, complete genome.     36  0.12  9
AC010669|AC010669.11 Drosophila melanogaster chromosome 4 clone BACR21N24 (D1072) RPCI-98 21.N.24 map 101F-102F strain y; cn bw sp, *** SEQUENCING IN PROGRESS ***, 84 unordered pieces.    36  0.14  5
AC006798|AC006798.2 Caenorhabditis elegans clone Y51F8, WORKING DRAFT SEQUENCE, 30 unordered pieces.    46  0.39  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT044784_1(BT044784|pid:none) Salmo salar clone ssal-rgf-503-272...    53   8e-06
BC168445_1(BC168445|pid:none) Xenopus tropicalis cDNA clone MGC:...    52   1e-05
(Q9DB90) RecName: Full=Uncharacterized protein C19orf61 homolog;...    50   4e-05
(Q9H0W8) RecName: Full=Uncharacterized protein C19orf61;  &AL136...    50   7e-05
AC004780_1(AC004780|pid:none) Homo sapiens chromosome 19, cosmid...    50   7e-05
AY813313_1(AY813313|pid:none) Schistosoma japonicum SJCHGC07078 ...    40   0.040
AC146575_26(AC146575|pid:none) Medicago truncatula clone mth2-14...    40   0.040
CP000412_1038(CP000412|pid:none) Lactobacillus delbrueckii subsp...    36   0.99
AE014187_156(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.3
CP000487_1670(CP000487|pid:none) Campylobacter fetus subsp. fetu...    35   1.3

 psg: 0.86  gvh: 0.41  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for AFJ432 is mit

>AFJ432F.Seq
CAACCATCAACAACCTCAACTTCAACAAACTCAACAGTAACCTCAACTTCAACAACATCA
CAGATTAGAGATAATAAATATTTATCAAAAACTCCAATTAATAATGAACCAATTAAAATA
TTATCAAAACAATTAAAATTTCAAAACTATGAAACTGTATATAATATATTAAGTAGATCT
AATACCCAATTCACTGTTATAGGTGTAATTGGTGGTCAATCTTGTGGTAAATCTACATTA
CTATCATCTTTAATTAAAAGATCACATGATAATAGTCAAACTCAACAACAGCAACAACAA
ACGAATGATTCAACAACAACAACAACAACAACATCAAATACTACTTCAACTACTACAACA
CCATCATCATCATCATCAACAACAACAGTATCAAATAATAATGCAAAATTATTTGAAATT
CAAACTGATAATAACTTTGGATTAGGTAAACATCAAACAATTGGTATTGATTTATTTGTA
TCAGAAGAAGAGAGGATTATTTATTTAGATACTCAACCACTTCAAAGTTTATCAATTATT
TGTGAAATGATTGAAGACAATTTTCATTTACCCAATCAATTCAACTCATATGAACAATAT
CATCATATGCAATGNTT----------