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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG537
Library SH
(Link to library)
Clone ID SHG537
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID SHG537P
(Link to Original site)
Representative DNA sequence 
>SHG537 (SHG537Q) /CSM/SH/SHG5-B/SHG537Q.Seq.d/
AAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATA
TCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATC
ATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXTCGTTCCATATCGTTCATTTGAGGTTG
ACAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTG
GTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCT
TGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCC
ACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAG
CTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAG
TCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTT
TATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCA
TTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAG
GTGCCTCTGTTGCTGTACTTTTACNTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTA
GACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTC
CATACAGTGCCACTCGTATTCTTTCGGTTCGAAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
nylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---VPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLALISIPVM
LVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVL
GAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGASVAVLLX
MESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRILSVRR
Translated Amino Acid sequence (All Frames) 
Frame A:
klfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---sfhivhlrltklihhsffqplslcschqvvhqmlssslvkvlfkplsyswlsfpfql
cwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfiksfipsslf
wvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvlg*vplllyfy
xwnpfllsctlldfig*nskinsilvmvldsfhtvplvffrfe

Frame B:
nylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---rsisfi*g*qs*stihssnhyryvlvtrwytrcclllwsrccsnrslilgshfhssy
vgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcssshsyhrvcf
gccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrclccctft
ygipfcflars*tslgripk*ilyw*wc*ihsiqchsysfgsk

Frame C:
ti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---VPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLALISIPVM
LVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVL
GAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGASVAVLLX
MESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRILSVRR
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1306   0.0
SHG537 (SHG537Q) /CSM/SH/SHG5-B/SHG537Q.Seq.d/                       1306   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1306   0.0
CHN523 (CHN523Q) /CSM/CH/CHN5-A/CHN523Q.Seq.d/                       1294   0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                       1292   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1292   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1287   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1287   0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                       1281   0.0
CHL154 (CHL154Q) /CSM/CH/CHL1-C/CHL154Q.Seq.d/                       1279   0.0
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1287   0.0    1
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   2e-13  2
DY983049|DY983049.1 CLSS5348.b1_H18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS5348, mRNA sequence.    80   9e-11  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   9e-11  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   9e-11  1
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   5e-09  5
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   6e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   1e-08  3
DT466948|DT466948.1 GH_CHX19K13.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX19K13 5', mRNA sequence.    72   2e-08  1
DT457612|DT457612.1 GH_ON34M24.r GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 3', mRNA sequence.    72   2e-08  1
dna update 2006. 4. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   436   e-121
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   436   e-121
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   207   4e-52
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   202   1e-50
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   199   6e-50
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   199   6e-50
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   199   8e-50
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   199   1e-49
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   199   1e-49
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   196   5e-49
protein update 2009. 4.19
PSORT 

 psg: 0.85  gvh: 0.49  alm: 0.18  top: 0.77  tms: 0.20  mit: 0.35  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SHG537 is end
5' end seq. ID SHG537F
5' end seq. 
>SHG537F.Seq
AAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATA
TCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATC
ATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 153
3' end seq. ID SHG537Z
3' end seq. 
>SHG537Z.Seq
NNNNNNNNNNTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACCATTCATT
CTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTC
TCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTT
ATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAG
AAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGT
GAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTT
TTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCAC
TCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAAT
CCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTA
CNTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAA
AATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCGTATTCTT
TCGGTTCGAAGA
Length of 3' end seq. 672
Connected seq. ID SHG537P
Connected seq. 
>SHG537P.Seq
AAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATA
TCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATC
ATTTAATTTTAATAAAAAAAAAA----------TCGTTCCATATCGTTCATTTGAGGTTG
ACAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTG
GTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCT
TGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCC
ACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAG
CTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAG
TCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTT
TATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCA
TTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAG
GTGCCTCTGTTGCTGTACTTTTACNTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTA
GACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTC
CATACAGTGCCACTCGTATTCTTTCGGTTCGAAGA
Length of connected seq. 805
Full length Seq ID -
Full length Seq. -
Length of full length seq. -