>SHG483 (SHG483Q) /CSM/SH/SHG4-D/SHG483Q.Seq.d/
TTTTTTTTTTAAAATTATTTATATGTATATTTTTTTTGTTTATTAAAAAATTTTAATTAT
TGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAA
TGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATA
TTTCATCACAAGTNTATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAAATT
CAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTNTT
TAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATG
GTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATC
CAAAANATTATTACTTTGAAACCTATGAAAANACATTGGCTTGTCCACCAGGNGTACCAT
GTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAAATCTTTTAGTTGCAAATACCT
TTGCCTATAACATTCCATTGATTAAACXXXXXXXXXX

fflklficifflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNI
SSQVYDQRILALKGKCYLNSNKNALYDEGEPGFGNVEIXLGNATDYKGNKYPIRYSSADG
TFIYDGLTQRTTYEFTFTNPKXYYFETYEXTLACPPGVPCIRPTVSADNLAANLLVANTF
AYNIPLIK---

Frame A:
fff*nylyvyffcllknfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*i
fhhkxminvfwh*kenvi*iqikmhcmmkvnqdlemlkfx*emqliireiniqyvihllm
vhlymmd*lnvqlmnlhlpiqxiitlkpmkxhwlvhqxyhvfvqrfqliiwqqif*lqip
lpitfh*l---


Frame B:
fffkiiymyiffvy*kiliivynifkyiy*yiliy*y**neniifiiinikynfkyciky
fitsx*styfgikrkmlfkfk*kciv**r*triwkc*nxfrkcn*l*gk*isntlfic*w
yiyi*winstynl*iyiyqskxlll*nl*kxiglstrxtmyssngfs**fgsksfsckyl
cl*hsid*---


Frame C:
fflklficifflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNI
SSQVYDQRILALKGKCYLNSNKNALYDEGEPGFGNVEIXLGNATDYKGNKYPIRYSSADG
TFIYDGLTQRTTYEFTFTNPKXYYFETYEXTLACPPGVPCIRPTVSADNLAANLLVANTF
AYNIPLIK---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG483 (SHG483Q) /CSM/SH/SHG4-D/SHG483Q.Seq.d/                        741   0.0
SHK766 (SHK766Q) /CSM/SH/SHK7-C/SHK766Q.Seq.d/                        735   0.0
SHL516 (SHL516Q) /CSM/SH/SHL5-A/SHL516Q.Seq.d/                        729   0.0
SHI450 (SHI450Q) /CSM/SH/SHI4-C/SHI450Q.Seq.d/                        729   0.0
SHG229 (SHG229Q) /CSM/SH/SHG2-B/SHG229Q.Seq.d/                        729   0.0
SHG226 (SHG226Q) /CSM/SH/SHG2-B/SHG226Q.Seq.d/                        729   0.0
SHE314 (SHE314Q) /CSM/SH/SHE3-A/SHE314Q.Seq.d/                        729   0.0
SHD360 (SHD360Q) /CSM/SH/SHD3-C/SHD360Q.Seq.d/                        729   0.0
CHN244 (CHN244Q) /CSM/CH/CHN2-B/CHN244Q.Seq.d/                        729   0.0
AHE742 (AHE742Q) /CSM/AH/AHE7-B/AHE742Q.Seq.d/                        729   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC090899|AC090899.3 Mus musculus clone RP23-25N5, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    38   0.39   2
DU889256|DU889256.1 387271 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0206N21 3, genomic survey sequence.    46   0.87   1
AC005213|AC005213.1 Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete sequence.    46   0.87   1
AC005188|AC005188.1 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence.    46   0.87   1
AC162924|AC162924.5 Mus musculus BAC clone RP23-292J21 from chromosome 6, complete sequence.    38   1.2    2
AW871630|AW871630.1 ra80c01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence.    44   3.5    1
AW871214|AW871214.1 ra56d01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence.    44   3.5    1
AW829376|AW829376.1 ra39d01.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:R153.1 CE02038 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE ;, mRNA sequence.    44   3.5    1
BI742812|BI742812.1 kx35c12.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5', mRNA sequence.    44   3.5    1
AV984767|AV984767.1 Ciona intestinalis cDNA, clone:cilv38i14, 5' end, single read.    44   3.5    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,...    48   2e-04
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    43   0.007
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    39   0.094
CP000830_3576(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ...    36   0.61
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    35   1.4
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    34   2.3
CP000804_904(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    34   3.0
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    34   3.0
AY445918_7(AY445918|pid:none) Candida zemplinina mitochondrion, ...    33   4.0
AM263198_431(AM263198|pid:none) Listeria welshimeri serovar 6b s...    33   5.2

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.47  tms: 0.07  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SHG483 is end

>SHG483F.Seq
TTTTTTTTTTAAAATTATTTATATGTATATTTTTTTTGTTTATTAAAAAATTTTAATTAT
TGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAA
TGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATA
TTTCATCACAAGTNTATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAAATT
CAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTNTT
TAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATG
GTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATC
CAAAANATTATTACTTTGAAACCTATGAAAANACATTGGCTTGTCCACCAGGNGTACCAT
GTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAAATCTTTTAGTTGCAAATACCT
TTGCCTATAACATTCCATTGATTAAACNNNNNNNNNN