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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG431
Library SH
(Link to library)
Clone ID SHG431
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID SHG431P
(Link to Original site)
Representative DNA sequence 
>SHG431 (SHG431Q) /CSM/SH/SHG4-B/SHG431Q.Seq.d/
CTGATGATAACAATGCCTGTACACTTGATTCCTGTTCACCATCAACTGGTGTTTCCCACA
CCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTCAACCG
GTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACTGTAGATGCTTGTA
CCAAATCAACAGGTGTCACACATACCCCAGTAAATGTAGATGATAACAACAAATGTACAA
TTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAACACTGATGATAACA
ATGCCTGTACAATTGATTCTTGTTCACCATCAACCGGTATTTCCCACACCCCAATCAATT
GTGATGATAAAAANGCCTGTACANTTGATTCATGTTCAAATTCAACTGGTTGTGTAAATA
CTCCAATTNNCTGTGACGATAATAATCCATGTACTGTTGATTCTTGNNATGACTTAACTG
GTNGTNGNNATACTCCAATCAATGTTGATGATAATAATACATGTACCATCGATGCCTGTA
CTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTTGATGATAATAACAANATGTACA
ATTGATNCATGTACCAAAGAAAGCGGGGTGACTCATACTCCCGTCAATACTGATGATAAC
AATGNNTGTACCCCTTGATTCCTGNTCANAATCAANCTGGTGGTTCCCATACCCCCAATA
AACTGTGATGATAATAATAAATGTACNTGTTGNATTCATTGTTCCAAAATCNACTGGXXX
XXXXXXXTACAGATGATAATANCAAATGTACATTAGATGCTTGTTCACCAAAGACTGGTG
TAACTCATACACCAATCAATTGTGATGATGGAAACAAATGTACAATCAATAGTTGTTCAC
CATCAGTTGGTTGTATCTCAACACCAGTTTCATGTCCAAAACCAAAAGATAAATGTTCAA
TCTCTCAATGTGATTCAGCCAAAGGTTGCATCGAAGTCCCAATGAATTGTACCTCTGATA
AATGTAATGAAGCATCATGTTGTGATGGTGTTTGTACCTCAAAACCAATTAGCTGTCCAA
AACCAAAGAATAAGTGTCAAGTTGCAAAATGTGATTTAATTAAAGGTTGTACCGTCTCAA
ATGTAGTATGTGATGATGGTAATGCTTGTACCGAAGATTCATGTTGTTCAGACACTGGTA
AATGTCAATTCGAACCAATCAAACTTCCAAAGAATAAAAACAAATGTATCATTTCAAAAT
GTGATCCAATTAAAGGTACAATCACCAACAGTACCGTAAACTGTGAATGTGATGACCTTT
GTAACATTGGTGAATGTTGTGAAGATACAGGAAAATGTAATTACAGACAAAAAGATTGTG
ATGATAATAATCCAAAAACAGCTGATAGTTGCGATTCCAAGACTGGTAAATGTATTAACA
AACCATATAATGTTATCACAAGTGGTTCTAATTTAATCTCTGGTTTAATTGGTGGTCTCA
TTGGTGGTGGTACAGGAGGTAAAGGTGATTGCAAAACTTGTAAAAATTAAATAANACTTT
TATT
sequence update 2002.10.25
Translated Amino Acid sequence 
lmitmpvhlipvhhqlvfptpqltvmivihvp*thvqiqpvv*tlqsmlmiiihvl*mlv
pnqqvshipq*m*mittnvqlmhvpkkvv*lilqstlmitmpvqlilvhhqpvfptpqsi
vmikxpvxlihvqiqlvv*ilqxxvtiiihvllilxmt*lvvxilqsmlmiiihvpsmpv
lnqqvllipqsmlmiitxctidxctkesgvthtpvntddnnxctp*FLXXIXLVVPIPPI
NCDDNNKCTCXIHCSKIXW---

---TDDNXKCTLDACSPKTGVTHTPINCDDGNKCTINSCSPSVGCISTPVSCPKPKDKCS
ISQCDSAKGCIEVPMNCTSDKCNEASCCDGVCTSKPISCPKPKNKCQVAKCDLIKGCTVS
NVVCDDGNACTEDSCCSDTGKCQFEPIKLPKNKNKCIISKCDPIKGTITNSTVNCECDDL
CNIGECCEDTGKCNYRQKDCDDNNPKTADSCDSKTGKCINKPYNVITSGSNLISGLIGGL
IGGGTGGKGDCKTCKN*ixll
Translated Amino Acid sequence (All Frames) 
Frame A:
lmitmpvhlipvhhqlvfptpqltvmivihvp*thvqiqpvv*tlqsmlmiiihvl*mlv
pnqqvshipq*m*mittnvqlmhvpkkvv*lilqstlmitmpvqlilvhhqpvfptpqsi
vmikxpvxlihvqiqlvv*ilqxxvtiiihvllilxmt*lvvxilqsmlmiiihvpsmpv
lnqqvllipqsmlmiitxctidxctkesgvthtpvntddnnxctp*FLXXIXLVVPIPPI
NCDDNNKCTCXIHCSKIXW---

---yr**xqmyirclftkdwcnsytnql**wkqmynq*lftiswlylntsfmsktkr*mf
nlsm*fsqrlhrspnelyl**m**siml*wclylktn*lsktke*vssckm*fn*rlyrl
kcsm**w*clyrrfmlfrhw*msirtnqtske*kqmyhfkm*sn*rynhqqyrkl*m**p
l*hw*ml*ryrkm*lqtkrl****skns**lrfqdw*my*qti*cyhkwf*fnlwfnwws
hwwwyrr*r*lqnl*klnxtfi

Frame B:
***qclyt*flftinwcfphpn*l****smyrrlmfkfnrlckhssqc****smycrcly
qinrchtypskcr**qqmyn*cmyqrrwcnsyssqh***qclyn*flftinryfphpnql
***kxlyx*fmfkfnwlckysnxl*r**smyc*flx*lnwxxxysnqc****ymyhrcly
*inrcysypsqc****qxvqlxhvpkkag*lilpsilmitmxvpldsxsxsxwwfpypq*
tvmiiinvxvxfivpkst---

---TDDNXKCTLDACSPKTGVTHTPINCDDGNKCTINSCSPSVGCISTPVSCPKPKDKCS
ISQCDSAKGCIEVPMNCTSDKCNEASCCDGVCTSKPISCPKPKNKCQVAKCDLIKGCTVS
NVVCDDGNACTEDSCCSDTGKCQFEPIKLPKNKNKCIISKCDPIKGTITNSTVNCECDDL
CNIGECCEDTGKCNYRQKDCDDNNPKTADSCDSKTGKCINKPYNVITSGSNLISGLIGGL
IGGGTGGKGDCKTCKN*ixll

Frame C:
ddnnactldscspstgvshtpincddsnpctvdscsnstgcvntpvnvddnnpctvdact
kstgvthtpvnvddnnkctidactkeggvthtpvntddnnactidscspstgishtpinc
ddkxactxdscsnstgcvntpixcddnnpctvdsxxdltgxxxtpinvddnntctidact
kstgvthtpvnvddnnxmyn*xmyqrkrgdsysrqy***qxxyplipxxnqxggshtpnk
l*****myxlxslfqnxl---

---qmiixnvh*mlvhqrlv*lihqsivmmetnvqsivvhhqlvvsqhqfhvqnqkinvq
slnviqpkvasksq*ivplinvmkhhvvmvfvpqnqlavqnqrisvklqnvi*lkvvpsq
m*yvmmvmlvpkihvvqtlvnvnsnqsnfqriktnvsfqnviqlkvqsptvp*tvnvmtf
vtlvnvvkiqenvitdkkivmiiiqkqlivaiprlvnvltnhimlsqvvli*slv*lvvs
lvvvqevkviaklvkik*xfy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG431 (SHG431Q) /CSM/SH/SHG4-B/SHG431Q.Seq.d/                       2910   0.0
SHC394 (SHC394Q) /CSM/SH/SHC3-D/SHC394Q.Seq.d/                       1515   0.0
CHR684 (CHR684Q) /CSM/CH/CHR6-D/CHR684Q.Seq.d/                       1501   0.0
CFC542 (CFC542Q) /CSM/CF/CFC5-B/CFC542Q.Seq.d/                       1499   0.0
CHM421 (CHM421Q) /CSM/CH/CHM4-A/CHM421Q.Seq.d/                       1485   0.0
SHG408 (SHG408Q) /CSM/SH/SHG4-A/SHG408Q.Seq.d/                       1481   0.0
SHA152 (SHA152Q) /CSM/SH/SHA1-C/SHA152Q.Seq.d/                       1475   0.0
CHS294 (CHS294Q) /CSM/CH/CHS2-D/CHS294Q.Seq.d/                       1475   0.0
SHA109 (SHA109Q) /CSM/SH/SHA1-A/SHA109Q.Seq.d/                       1471   0.0
SHG420 (SHG420Q) /CSM/SH/SHG4-A/SHG420Q.Seq.d/                       1469   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               82   1e-34  7
AF134683|AF134683.1 Plasmodium falciparum strain UNK1 CG2 omega repeat (cg2) gene, partial cds.    32   7e-05  5
AF134658|AF134658.1 Plasmodium falciparum strain SEN16 from Senegal CG2 omega repeat (cg2) gene, partial cds.    32   9e-05  5
G37776|G37776.1 atp Plasmodium falciparum haploid Plasmodium falciparum STS genomic, sequence tagged site.    30   1e-04  5
AJ310615|AJ310615.1 Plasmodium falciparum partial cg2 gene, isolate M27, omega domain.    36   2e-04  5
AF134686|AF134686.1 Plasmodium falciparum strain IVC10 from Cote d' Ivoire CG2 omega repeat (cg2) gene, partial cds.    32   3e-04  5
AF134662|AF134662.1 Plasmodium falciparum strain UPV4 from Burkina Faso CG2 omega repeat (cg2) gene, partial cds.    32   3e-04  5
AF134666|AF134666.1 Plasmodium falciparum strain IVC3 from Cote d' Ivoire CG2 omega repeat (cg2) gene, partial cds.    32   4e-04  5
AF134664|AF134664.1 Plasmodium falciparum strain IVC17 from Cote d' Ivoire CG2 omega repeat (cg2) gene, partial cds.    32   4e-04  5
CK991559|CK991559.1 EST0111 Eyestalk cDNA library Penaeus monodon cDNA clone ES-N-S03-555-W 5' similar to Histidine-rich glycoprotein precursor (Plasmodium lophurae), mRNA sequence.    30   5e-04  6
dna update 2006. 3.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   618   e-175
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   429   e-118
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   423   e-117
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   275   3e-72
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   227   7e-58
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   220   9e-56
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                120   1e-25
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                107   1e-21
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                102   5e-20
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   101   8e-20
protein update 2009. 4.18
PSORT 

 psg: 0.91  gvh: 0.61  alm: 0.37  top: 0.50  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for SHG431 is cyt
5' end seq. ID SHG431F
5' end seq. 
>SHG431F.Seq
CTGATGATAACAATGCCTGTACACTTGATTCCTGTTCACCATCAACTGGTGTTTCCCACA
CCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTCAACCG
GTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACTGTAGATGCTTGTA
CCAAATCAACAGGTGTCACACATACCCCAGTAAATGTAGATGATAACAACAAATGTACAA
TTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAACACTGATGATAACA
ATGCCTGTACAATTGATTCTTGTTCACCATCAACCGGTATTTCCCACACCCCAATCAATT
GTGATGATAAAAANGCCTGTACANTTGATTCATGTTCAAATTCAACTGGTTGTGTAAATA
CTCCAATTNNCTGTGACGATAATAATCCATGTACTGTTGATTCTTGNNATGACTTAACTG
GTNGTNGNNATACTCCAATCAATGTTGATGATAATAATACATGTACCATCGATGCCTGTA
CTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTTGATGATAATAACAANATGTACA
ATTGATNCATGTACCAAAGAAAGCGGGGTGACTCATACTCCCGTCAATACTGATGATAAC
AATGNNTGTACCCCTTGATTCCTGNTCANAATCAANCTGGTGGTTCCCATACCCCCAATA
AACTGTGATGATAATAATAAATGTACNTGTTGNATTCATTGTTCCAAAATCNACTGGNNN
NNNNNNN
Length of 5' end seq. 787
3' end seq. ID SHG431Z
3' end seq. 
>SHG431Z.Seq
NNNNNNNNNNTACAGATGATAATANCAAATGTACATTAGATGCTTGTTCACCAAAGACTG
GTGTAACTCATACACCAATCAATTGTGATGATGGAAACAAATGTACAATCAATAGTTGTT
CACCATCAGTTGGTTGTATCTCAACACCAGTTTCATGTCCAAAACCAAAAGATAAATGTT
CAATCTCTCAATGTGATTCAGCCAAAGGTTGCATCGAAGTCCCAATGAATTGTACCTCTG
ATAAATGTAATGAAGCATCATGTTGTGATGGTGTTTGTACCTCAAAACCAATTAGCTGTC
CAAAACCAAAGAATAAGTGTCAAGTTGCAAAATGTGATTTAATTAAAGGTTGTACCGTCT
CAAATGTAGTATGTGATGATGGTAATGCTTGTACCGAAGATTCATGTTGTTCAGACACTG
GTAAATGTCAATTCGAACCAATCAAACTTCCAAAGAATAAAAACAAATGTATCATTTCAA
AATGTGATCCAATTAAAGGTACAATCACCAACAGTACCGTAAACTGTGAATGTGATGACC
TTTGTAACATTGGTGAATGTTGTGAAGATACAGGAAAATGTAATTACAGACAAAAAGATT
GTGATGATAATAATCCAAAAACAGCTGATAGTTGCGATTCCAAGACTGGTAAATGTATTA
ACAAACCATATAATGTTATCACAAGTGGTTCTAATTTAATCTCTGGTTTAATTGGTGGTC
TCATTGGTGGTGGTACAGGAGGTAAAGGTGATTGCAAAACTTGTAAAAATTAAATAANAC
TTTTATT
Length of 3' end seq. 787
Connected seq. ID SHG431P
Connected seq. 
>SHG431P.Seq
CTGATGATAACAATGCCTGTACACTTGATTCCTGTTCACCATCAACTGGTGTTTCCCACA
CCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTCAACCG
GTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACTGTAGATGCTTGTA
CCAAATCAACAGGTGTCACACATACCCCAGTAAATGTAGATGATAACAACAAATGTACAA
TTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAACACTGATGATAACA
ATGCCTGTACAATTGATTCTTGTTCACCATCAACCGGTATTTCCCACACCCCAATCAATT
GTGATGATAAAAANGCCTGTACANTTGATTCATGTTCAAATTCAACTGGTTGTGTAAATA
CTCCAATTNNCTGTGACGATAATAATCCATGTACTGTTGATTCTTGNNATGACTTAACTG
GTNGTNGNNATACTCCAATCAATGTTGATGATAATAATACATGTACCATCGATGCCTGTA
CTAAATCAACAGGTGTTACTCATACCCCAGTCAATGTTGATGATAATAACAANATGTACA
ATTGATNCATGTACCAAAGAAAGCGGGGTGACTCATACTCCCGTCAATACTGATGATAAC
AATGNNTGTACCCCTTGATTCCTGNTCANAATCAANCTGGTGGTTCCCATACCCCCAATA
AACTGTGATGATAATAATAAATGTACNTGTTGNATTCATTGTTCCAAAATCNACTGG---
-------TACAGATGATAATANCAAATGTACATTAGATGCTTGTTCACCAAAGACTGGTG
TAACTCATACACCAATCAATTGTGATGATGGAAACAAATGTACAATCAATAGTTGTTCAC
CATCAGTTGGTTGTATCTCAACACCAGTTTCATGTCCAAAACCAAAAGATAAATGTTCAA
TCTCTCAATGTGATTCAGCCAAAGGTTGCATCGAAGTCCCAATGAATTGTACCTCTGATA
AATGTAATGAAGCATCATGTTGTGATGGTGTTTGTACCTCAAAACCAATTAGCTGTCCAA
AACCAAAGAATAAGTGTCAAGTTGCAAAATGTGATTTAATTAAAGGTTGTACCGTCTCAA
ATGTAGTATGTGATGATGGTAATGCTTGTACCGAAGATTCATGTTGTTCAGACACTGGTA
AATGTCAATTCGAACCAATCAAACTTCCAAAGAATAAAAACAAATGTATCATTTCAAAAT
GTGATCCAATTAAAGGTACAATCACCAACAGTACCGTAAACTGTGAATGTGATGACCTTT
GTAACATTGGTGAATGTTGTGAAGATACAGGAAAATGTAATTACAGACAAAAAGATTGTG
ATGATAATAATCCAAAAACAGCTGATAGTTGCGATTCCAAGACTGGTAAATGTATTAACA
AACCATATAATGTTATCACAAGTGGTTCTAATTTAATCTCTGGTTTAATTGGTGGTCTCA
TTGGTGGTGGTACAGGAGGTAAAGGTGATTGCAAAACTTGTAAAAATTAAATAANACTTT
TATT
Length of connected seq. 1554
Full length Seq ID -
Full length Seq. -
Length of full length seq. -