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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG429
Library SH
(Link to library)
Clone ID SHG429
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16708-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHG429 (SHG429Q) /CSM/SH/SHG4-B/SHG429Q.Seq.d/
AATTTTTAGTAGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAAATATTAATA
CTAATATAATAAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAAXXXXXXXX
XX
sequence update 2002.10.25
Translated Amino Acid sequence 
IFSRFGLKKFYWFFNTKY*y*ynk*ink*iyk*ikk---
Translated Amino Acid sequence (All Frames) 
Frame A:
nf**irfkeillvf*y*ilili**ink*ini*inkkk---


Frame B:
IFSRFGLKKFYWFFNTKY*y*ynk*ink*iyk*ikk---


Frame C:
flvdsv*rnfigflilnintniink*inkyink*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ411 (VHQ411Q) /CSM/VH/VHQ4-A/VHQ411Q.Seq.d/                         82   2e-15
VHO685 (VHO685Q) /CSM/VH/VHO6-D/VHO685Q.Seq.d/                         82   2e-15
VHM332 (VHM332Q) /CSM/VH/VHM3-B/VHM332Q.Seq.d/                         82   2e-15
VHH693 (VHH693Q) /CSM/VH/VHH6-D/VHH693Q.Seq.d/                         82   2e-15
VHF372 (VHF372Q) /CSM/VH/VHF3-C/VHF372Q.Seq.d/                         82   2e-15
VHD456 (VHD456Q) /CSM/VH/VHD4-C/VHD456Q.Seq.d/                         82   2e-15
VHD118 (VHD118Q) /CSM/VH/VHD1-A/VHD118Q.Seq.d/                         82   2e-15
SHG429 (SHG429Q) /CSM/SH/SHG4-B/SHG429Q.Seq.d/                         82   2e-15
SHE269 (SHE269Q) /CSM/SH/SHE2-C/SHE269Q.Seq.d/                         82   2e-15
SHC576 (SHC576Q) /CSM/SH/SHC5-D/SHC576Q.Seq.d/                         82   2e-15
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    74   7e-10  1
AC164173|AC164173.2 Mus musculus clone RP23-405C3, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42   2.5    1
AW234753|AW234753.1 sf18h02.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-364 5', mRNA sequence.    42   2.5    1
DX204628|DX204628.1 OR_ABa0074P22.f OR_ABa Oryza ridleyi genomic clone OR_ABa0074P22 5', genomic survey sequence.    42   2.5    1
CZ796627|CZ796627.1 OC__Ba0165O17.f OC__Ba Oryza coarctata genomic clone OC__Ba0165O17 5', genomic survey sequence.    42   2.5    1
CZ764028|CZ764028.1 OC__Ba0118L24.f OC__Ba Oryza coarctata genomic clone OC__Ba0118L24 5', genomic survey sequence.    42   2.5    1
AC160147|AC160147.6 Mus musculus 10 BAC RP24-576A6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence.    42   2.5    1
AV065281|AV065281.1 Mus musculus adult male small intestine cDNA, partial sequence, clone 2010015E09.    40   9.7    1
AV062466|AV062466.1 Mus musculus adult male small intestine cDNA, partial sequence, clone 2010003G13.    40   9.7    1
AV062105|AV062105.1 Mus musculus adult male small intestine cDNA, partial sequence, clone 2010002D17.    40   9.7    1
dna update 2006. 3.30
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 58,413,350
protein update 2009. 4.18
PSORT -
5' end seq. ID SHG429F
5' end seq. 
>SHG429F.Seq
AATTTTTAGTAGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAAATATTAATA
CTAATATAATAAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -