NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG428
Library SH
(Link to library)
Clone ID SHG428
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14600-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHG428 (SHG428Q) /CSM/SH/SHG4-B/SHG428Q.Seq.d/
ACTGTTATAGAATTTTTTTTATCGTATTTATCAATCTAATTTAAAAAAGAAAAATAAAGT
AAAATAAAATAAAATAAAAAAAATAAAAAAATATGTTTAGAAAAAAATTAAAAAAAATAA
AAAAAATAATATAAAATAAAATAATAATAAAAAAAATTAAAATTAAAATAAATATTTGAA
AAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
ll*NFFYRIYQSNLKKKNKVK*nkikkikkyv*kkikknkknnik*nnnkkn*n*nkylk
kk---
Translated Amino Acid sequence (All Frames) 
Frame A:
tviefflsylsi*fkkek*skik*nkknkkiclekn*kk*kk*ykik***kklklk*ife
kk---


Frame B:
ll*NFFYRIYQSNLKKKNKVK*nkikkikkyv*kkikknkknnik*nnnkkn*n*nkylk
kk---


Frame C:
cyriffivfinli*krkik*nkik*kk*knmfrkklkkikkii*nkiiikkikikini*k
k---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG428 (SHG428Q) /CSM/SH/SHG4-B/SHG428Q.Seq.d/                         44   8e-04
own update 2002.12. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    44   1.1    1
dna update 2003. 5. 9
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 46,295,980
protein update 2009. 4.18
PSORT -
5' end seq. ID SHG428F
5' end seq. 
>SHG428F.Seq
ACTGTTATAGAATTTTTTTTATCGTATTTATCAATCTAATTTAAAAAAGAAAAATAAAGT
AAAATAAAATAAAATAAAAAAAATAAAAAAATATGTTTAGAAAAAAATTAAAAAAAATAA
AAAAAATAATATAAAATAAAATAATAATAAAAAAAATTAAAATTAAAATAAATATTTGAA
AAAAAAAANNNNNNNNNN
Length of 5' end seq. 198
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -