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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG405
Library SH
(Link to library)
Clone ID SHG405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHG405P
(Link to Original site)
Representative DNA sequence 
>SHG405 (SHG405Q) /CSM/SH/SHG4-A/SHG405Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XTTCAAGAAGGTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTG
AATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCT
GCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACC
AATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGAT
ATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGAT
GCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAA
GAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAA
CAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAA
GTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAAC
GATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCT
AAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCT
GACCAAATTAAAAATCAAANNAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QEGEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNE
ITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQXK
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---fkkvkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkim
klpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkr
mkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfn
krtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkikxk

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---srr*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**
nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re
*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknst
rercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksxxk

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QEGEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNE
ITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQXK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK614 (SHK614Q) /CSM/SH/SHK6-A/SHK614Q.Seq.d/                        805   0.0
SHG405 (SHG405Q) /CSM/SH/SHG4-A/SHG405Q.Seq.d/                        805   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        797   0.0
SHJ524 (SHJ524Q) /CSM/SH/SHJ5-A/SHJ524Q.Seq.d/                        797   0.0
SHG406 (SHG406Q) /CSM/SH/SHG4-A/SHG406Q.Seq.d/                        797   0.0
SHG232 (SHG232Q) /CSM/SH/SHG2-B/SHG232Q.Seq.d/                        797   0.0
SHD878 (SHD878Q) /CSM/SH/SHD8-D/SHD878Q.Seq.d/                        797   0.0
SHD613 (SHD613Q) /CSM/SH/SHD6-A/SHD613Q.Seq.d/                        797   0.0
SHD492 (SHD492Q) /CSM/SH/SHD4-D/SHD492Q.Seq.d/                        797   0.0
SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/                        797   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   797   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AL356122|AL356122.9 Human DNA sequence from clone RP11-61P22 on chromosome 6.    40   0.056  6
DT591493|DT591493.1 she01-31ms3-h08 She01 Saruma henryi cDNA clone she01-31ms3-h08 5', mRNA sequence.    36   0.10   3
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X.    36   0.13   7
DU863702|DU863702.1 85090 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0075E18 3, genomic survey sequence.    44   0.26   2
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.30   9
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.31   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.31   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.31   1
dna update 2006. 3.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   301   2e-80
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    39   0.19
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.32
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    38   0.42
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    38   0.42
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.54
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.71
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    37   0.93
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    37   0.93
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.6
protein update 2009. 4.18
PSORT 

 psg: 0.38  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHG405 is nuc
5' end seq. ID SHG405F
5' end seq. 
>SHG405F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID SHG405Z
3' end seq. 
>SHG405Z.Seq
NNNNNNNNNNTTCAAGAAGGTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAAT
TCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAAT
GGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAAT
GAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAAT
GGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAAT
GAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAG
AATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAA
CAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAA
CAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAA
CAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCT
GAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAA
CAATCTCCTGACCAAATTAAAAATCAAANNAAAAA
Length of 3' end seq. 695
Connected seq. ID SHG405P
Connected seq. 
>SHG405P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-TTCAAGAAGGTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTG
AATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCT
GCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACC
AATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGAT
ATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGAT
GCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAA
GAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAA
CAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAA
GTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAAC
GATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCT
AAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCT
GACCAAATTAAAAATCAAANNAAAAA
Length of connected seq. 796
Full length Seq ID -
Full length Seq. -
Length of full length seq. -