AFB155
Library AF
(Link to library)
Clone ID AFB155
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16464-1
Original site URL
Representative seq. ID AFB155P
(Link to Original site)
Representative DNA sequence
>AFB155 (AFB155Q) /CSM/AF/AFB1-C/AFB155Q.Seq.d/
AAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATACATCTCCAAGAAAAAG
AGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGATAGTATTAGAAATAGTAA
TGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGATGATCATAATGTACCAAT
AAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAATCATAGAGGXXXXXXXXX
XAAATGATATCGTGGTTTAATTCATTTGGTGTTGGTATGGCTATTTTAGGTCAAAATTGG
GTTTGGTGGTTAGATCCAAGTGGTGCAATCGTTGTTGCTTTAATCATTTTACGTTCTTGG
ACTTCTGAAGCCTATGAACAAATTCAATTATTAGTTGGTAAATCAGCATCACCAGAATTC
CTTCAAAAATTAACTTTTATAGCTTTAACTCATCATCCTGAAGTACTTAAAGTTGATACT
TGTAGAGCATTCCATGTTGGTAATAATTTATATGTTGAAGTTGATATAGTCTTACCACCA
TCAATGCCATTGGTTCAAACTCATGATATTGGTGAATCACTTCAAGAGAAATTAGAATCA
TTATCAGATGTTGATAGAGCTTTTGTTCATGTTGATTATGAATATAAACATAAACCAGAA
CATAAAAGAGTTCATTAAAAAAATTAAAAAAAATAAAAAAAATAAAAAAATAAAAAAAAT
AAAAAAAATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
KKMYSEIIEDEGMYTSPRKRDNNNDDKVSLINKDSIRNSNDSISSSSSSSSNDDDHNVPI
NPSVELEFEQYINNHR---

---MISWFNSFGVGMAILGQNWVWWLDPSGAIVVALIILRSWTSEAYEQIQLLVGKSASP
EFLQKLTFIALTHHPEVLKVDTCRAFHVGNNLYVEVDIVLPPSMPLVQTHDIGESLQEKL
ESLSDVDRAFVHVDYEYKHKPEHKRVH*kn*kk*kk*knkknkkn


Translated Amino Acid sequence (All Frames)
Frame A:
kknvlrny*r*gdvyiskkkr******s*fn**r*y*k***qyfiviiivik***s*ctn
ksisriri*tiyq*s*r---

---k*yrglihlvlvwlf*vkigfgg*iqvvqslll*sfyvlgllkpmnkfny*lvnqhh
qnsfkn*ll*l*liilkylklilvehsmlviiymlkli*syhhqchwfklmilvnhfkrn
*nhyqmliellfmlimnininqnikefikkikknkknkkikkikki

Frame B:
KKMYSEIIEDEGMYTSPRKRDNNNDDKVSLINKDSIRNSNDSISSSSSSSSNDDDHNVPI
NPSVELEFEQYINNHR---

---ndivv*fiwcwygyfrsklglvvrskwcnrccfnhftfldf*sl*tnsiisw*isit
ripskinfysfnsss*st*s*yl*sipcw**fic*s*yslttinaigsns*yw*itsrei
riiirc**sfcsc*l*i*t*trt*ksslkklkkikkikk*kk*kkl

Frame C:
kkctqkllkmrgcihlqekeiiimmiklv*likivleivmtvfhrhhhrhqmmmiimyq*
ihq*n*nlnnisiiie---

---MISWFNSFGVGMAILGQNWVWWLDPSGAIVVALIILRSWTSEAYEQIQLLVGKSASP
EFLQKLTFIALTHHPEVLKVDTCRAFHVGNNLYVEVDIVLPPSMPLVQTHDIGESLQEKL
ESLSDVDRAFVHVDYEYKHKPEHKRVH*kn*kk*kk*knkknkkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFB155 (AFB155Q) /CSM/AF/AFB1-C/AFB155Q.Seq.d/ 1265 0.0
VFJ381 (VFJ381Q) /CSM/VF/VFJ3-D/VFJ381Q.Seq.d/ 846 0.0
SFK666 (SFK666Q) /CSM/SF/SFK6-C/SFK666Q.Seq.d/ 846 0.0
SFG327 (SFG327Q) /CSM/SF/SFG3-B/SFG327Q.Seq.d/ 846 0.0
AFA732 (AFA732Q) /CSM/AF/AFA7-B/AFA732Q.Seq.d/ 831 0.0
AFL320 (AFL320Q) /CSM/AF/AFL3-A/AFL320Q.Seq.d/ 825 0.0
SFH785 (SFH785Q) /CSM/SF/SFH7-D/SFH785Q.Seq.d/ 819 0.0
CFH740 (CFH740Q) /CSM/CF/CFH7-B/CFH740Q.Seq.d/ 807 0.0
AFK811 (AFK811Q) /CSM/AF/AFK8-A/AFK811Q.Seq.d/ 807 0.0
AFG186 (AFG186Q) /CSM/AF/AFG1-D/AFG186Q.Seq.d/ 801 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 48 1e-04 10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 48 3e-04 4
AW102462|AW102462.1 sd88e01.y1 Gm-c1009 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1009-1489 5' similar to TR:O80632 O80632 F12L6.11 PROTEIN. ;, mRNA sequence. 40 5e-04 2
BM092674|BM092674.1 sah17c04.y3 Gm-c1086 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1086-1640 5' similar to TR:O80632 O80632 F12L6.11 PROTEIN. ;, mRNA sequence. 40 6e-04 2
BF596717|BF596717.1 su73g11.y1 Gm-c1055 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1055-334 5' similar to TR:O80632 O80632 F12L6.11 PROTEIN. ;, mRNA sequence. 40 8e-04 2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 48 0.002 10
BU498497|BU498497.1 PfESToab97h12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:ASP_PLAFS P13825 ASPARTIC ACID-RICH PROTEIN PRECURSOR. [1] ;, mRNA sequence. 54 0.002 1
AJ006966|AJ006966.1 Plasmodium falciparum genes encoding gamma-glutamylcysteine synthetase and aspartic acid-rich protein. 54 0.002 1
AF543685|AF543685.1 Plasmodium falciparum 3D7 aspartic acid-rich protein (ARP) mRNA, complete cds. 54 0.002 1
BQ739562|BQ739562.1 PfESToab47e06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:HRP3_PLAFS P14586 HISTIDINE-RICH PROTEIN. ;, mRNA sequence. 54 0.002 1
dna update 2003. 7.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU633895_143(CU633895|pid:none) Podospora anserina genomic DNA c... 169 1e-40
EF677555_1(EF677555|pid:none) Picea sitchensis clone WS02770_I19... 167 3e-40
AY181258_1(AY181258|pid:none) Stylosanthes hamata cation diffusi... 162 7e-39
AC004218_11(AC004218|pid:none) Arabidopsis thaliana chromosome 2... 160 3e-38
EF453693_1(EF453693|pid:none) Populus trichocarpa Mn-specific ca... 160 4e-38
AY181257_1(AY181257|pid:none) Stylosanthes hamata cation diffusi... 159 6e-38
AK227391_1(AK227391|pid:none) Arabidopsis thaliana mRNA for hypo... 159 8e-38
AC006341_11(AC006341|pid:none) Arabidopsis thaliana chromosome 1... 159 8e-38
AP003231_3(AP003231|pid:none) Oryza sativa Japonica Group genomi... 157 2e-37
AK061853_1(AK061853|pid:none) Oryza sativa Japonica Group cDNA c... 156 7e-37
protein update 2009. 3.26
PSORT

psg: 0.75 gvh: 0.37 alm: 0.30 top: 0.53 tms: 0.07 mit: 0.27 mip: 0.00
nuc: 0.09 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for AFB155 is end

5' end seq. ID AFB155F
5' end seq.
>AFB155F.Seq
AAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATACATCTCCAAGAAAAAG
AGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGATAGTATTAGAAATAGTAA
TGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGATGATCATAATGTACCAAT
AAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAATCATAGAGG---------
-
Length of 5' end seq. 231
3' end seq. ID AFB155Z
3' end seq.
>AFB155Z.Seq
----------AAATGATATCGTGGTTTAATTCATTTGGTGTTGGTATGGCTATTTTAGGT
CAAAATTGGGTTTGGTGGTTAGATCCAAGTGGTGCAATCGTTGTTGCTTTAATCATTTTA
CGTTCTTGGACTTCTGAAGCCTATGAACAAATTCAATTATTAGTTGGTAAATCAGCATCA
CCAGAATTCCTTCAAAAATTAACTTTTATAGCTTTAACTCATCATCCTGAAGTACTTAAA
GTTGATACTTGTAGAGCATTCCATGTTGGTAATAATTTATATGTTGAAGTTGATATAGTC
TTACCACCATCAATGCCATTGGTTCAAACTCATGATATTGGTGAATCACTTCAAGAGAAA
TTAGAATCATTATCAGATGTTGATAGAGCTTTTGTTCATGTTGATTATGAATATAAACAT
AAACCAGAACATAAAAGAGTTCATTAAAAAAATTAAAAAAAATAAAAAAAATAAAAAAAT
AAAAAAAATAAAAAAAATTA
Length of 3' end seq. 490
Connected seq. ID AFB155P
Connected seq.
>AFB155P.Seq
AAAAAAAATGTACTCAGAAATTATTGAAGATGAGGGGATGTATACATCTCCAAGAAAAAG
AGATAATAATAATGATGATAAAGTTAGTTTAATTAATAAAGATAGTATTAGAAATAGTAA
TGACAGTATTTCATCGTCATCATCATCGTCATCAAATGATGATGATCATAATGTACCAAT
AAATCCATCAGTAGAATTAGAATTTGAACAATATATCAATAATCATAGAGG---------
-AAATGATATCGTGGTTTAATTCATTTGGTGTTGGTATGGCTATTTTAGGTCAAAATTGG
GTTTGGTGGTTAGATCCAAGTGGTGCAATCGTTGTTGCTTTAATCATTTTACGTTCTTGG
ACTTCTGAAGCCTATGAACAAATTCAATTATTAGTTGGTAAATCAGCATCACCAGAATTC
CTTCAAAAATTAACTTTTATAGCTTTAACTCATCATCCTGAAGTACTTAAAGTTGATACT
TGTAGAGCATTCCATGTTGGTAATAATTTATATGTTGAAGTTGATATAGTCTTACCACCA
TCAATGCCATTGGTTCAAACTCATGATATTGGTGAATCACTTCAAGAGAAATTAGAATCA
TTATCAGATGTTGATAGAGCTTTTGTTCATGTTGATTATGAATATAAACATAAACCAGAA
CATAAAAGAGTTCATTAAAAAAATTAAAAAAAATAAAAAAAATAAAAAAATAAAAAAAAT
AAAAAAAATTA
Length of connected seq. 721
Full length Seq ID -
Full length Seq. -
Length of full length seq. -