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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG289
Library SH
(Link to library)
Clone ID SHG289
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHG289P
(Link to Original site)
Representative DNA sequence 
>SHG289 (SHG289Q) /CSM/SH/SHG2-D/SHG289Q.Seq.d/
TATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAAT
TTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCT
AAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGA
ATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCA
AGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACC
GGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTG
GGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAA
CAAAAATTAATTAAACAAAAACATTAAAAAAAAAAAAAAAAAAAANTTTATTTTTTGTNT
AAAAAAAAAAXXXXXXXXXXATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTAT
AAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTG
GGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGC
ATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAA
TATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGT
CCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATT
CATTGGTTTCCTAGCTTTGGGTGTATTAGGTTTATTTGCTNGGAACATTCTAGTAAGGAA
AGAAATACAAAGAGAANAACAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iihyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple
*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lw
vylvyllgnsmkerntkrmnkn*LNKNIKKKKKKXFIFCXKKK---

---IIHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphm
ple*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs
*lwvy*vyllgtf**gkkykexnkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
yyslyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassyasg
inaskdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnkfigflal
gvfglfawkfyegkkykeneqklikqkh*kkkkkkxyflxkkk---

---IIHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphm
ple*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs
*lwvy*vyllgtf**gkkykexnkkk

Frame B:
iihyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple
*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lw
vylvyllgnsmkerntkrmnkn*LNKNIKKKKKKXFIFCXKKK---

---lfiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeycilic
lwnkcikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfp
sfgcirficxehsskerntkrxtkkk

Frame C:
lfiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwn
kcikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfg
ciwficleil*rkeiqre*tkin*tktlkkkkkkxlffv*kk---

---yslyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassya
sginaskdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnkfigfl
algvlglfaxnilvrkeiqrexqkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        731   0.0
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        731   0.0
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        731   0.0
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        731   0.0
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        731   0.0
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        731   0.0
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        731   0.0
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/                        731   0.0
SSG837 (SSG837Q) /CSM/SS/SSG8-B/SSG837Q.Seq.d/                        731   0.0
SSF657 (SSF657Q) /CSM/SS/SSF6-C/SSF657Q.Seq.d/                        731   0.0
own update 2004. 7.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enrichedlibrary, clone:4732401F15, 3' end partial sequence.    52   0.023  1
AF071814|AF071814.1 Streptococcus pneumoniae strain WU2 PspA (pspA) gene, partial cds.    52   0.023  1
AC178488|AC178488.1 Strongylocentrotus purpuratus clone R3-3033O19, WORKING DRAFT SEQUENCE, 17 unordered pieces.    36   0.16   7
AC178607|AC178607.1 Strongylocentrotus purpuratus clone R3-113O11, WORKING DRAFT SEQUENCE, 12 unordered pieces.    40   0.16   3
AC002383|AC002383.1 Homo sapiens BAC clone CTB-67E13 from 7, complete sequence.    38   0.21   2
CX088611|CX088611.1 EHADL40TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    38   0.24   2
CX717239|CX717239.1 1333732 NCCCWA 07RT Oncorhynchus mykiss cDNA 3', mRNA sequence.    48   0.36   1
CX026472|CX026472.1 1337905 NCCCWA 10RT#3 Oncorhynchus mykiss cDNA 5', mRNA sequence.    48   0.36   1
CX146652|CX146652.1 1286573 NCCCWA 03RT Oncorhynchus mykiss cDNA 5', mRNA sequence.    48   0.36   1
DU151149|DU151149.1 OG_ABa0018P23.f OG_ABa Oryza granulata genomic clone OG_ABa0018P23 5', genomic survey sequence.    48   0.36   1
dna update 2006. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014188_347(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.2
AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    36   2.0
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   2.6
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   2.6
AL844507_56(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   3.4
protein update 2009. 4.18
PSORT 

 psg: 0.70  gvh: 0.03  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.43  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SHG289 is nuc
5' end seq. ID SHG289F
5' end seq. 
>SHG289F.Seq
TATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAAT
TTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCT
AAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGA
ATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCA
AGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACC
GGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTG
GGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAA
CAAAAATTAATTAAACAAAAACATTAAAAAAAAAAAAAAAAAAAANTTTATTTTTTGTNT
AAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 500
3' end seq. ID SHG289Z
3' end seq. 
>SHG289Z.Seq
NNNNNNNNNNATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAA
ATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAA
AAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATAT
GCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAG
AACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCT
CAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTC
CTAGCTTTGGGTGTATTAGGTTTATTTGCTNGGAACATTCTAGTAAGGAAAGAAATACAA
AGAGAANAACAAAAAAAAAA
Length of 3' end seq. 440
Connected seq. ID SHG289P
Connected seq. 
>SHG289P.Seq
TATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAAT
TTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCT
AAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGA
ATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCA
AGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACC
GGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTG
GGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAA
CAAAAATTAATTAAACAAAAACATTAAAAAAAAAAAAAAAAAAAANTTTATTTTTTGTNT
AAAAAAAAAA----------ATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTAT
AAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTG
GGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGC
ATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAA
TATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGT
CCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATT
CATTGGTTTCCTAGCTTTGGGTGTATTAGGTTTATTTGCTNGGAACATTCTAGTAAGGAA
AGAAATACAAAGAGAANAACAAAAAAAAAA
Length of connected seq. 920
Full length Seq ID -
Full length Seq. -
Length of full length seq. -