SHG252
Library SH
(Link to library)
Clone ID SHG252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11316-1
Original site URL
Representative seq. ID SHG252P
(Link to Original site)
Representative DNA sequence
>SHG252 (SHG252Q) /CSM/SH/SHG2-C/SHG252Q.Seq.d/
TATCTCTGTTTATGATGTCGTAGTTGGTGATGTTGTTAAATTAGAAACTGGTGATACAAT
TCCCGCTGATGGTCTTTACATTGCCGGTCAAAGTATTGCAGTCGATGAAAGTTCAATGAC
TGGTGAATCAGATCAAAAAAGAAAATCAAATGATCGTCCTTTCTTTTTATCAGGTTGTCA
AGTTTTGGAAGGCAGTGCAAGTATGTTGGTAATTGCCGTTGGTCCAAACTCTCAATGGGG
TAAATTAAAACTATTGTTACAATCACCAGATTCCGATACTCCATTAACTCAAAAATTGGA
GAAATTAGCTGAAACTATTGGTAAATTTGGTTTAATTGCTGCCATTTTAACCTTTGGTGT
TTTATTATTAAAATATGTAATTGTATTTGTAAAGGATGGTCATACTTGGCATTGGAGTGA
ATTGGGTACAATTGTTGGCTTTGTTGTAACAGCAATTACAATTATTGTCGTTGCAGTACC
TGAAGGTTTACCATTGGCAGTAACAATCTCTTTGGCATACAGTATGATGAAAATGATGAA
GXXXXXXXXXXTCTTTAATCGTCGTCCATATGGTAGATTTGATTCTTTAATAACATATCG
TATGTGGAGAAATATTATTGGTCAATCAATTTATCAAATTGCTTTCCTCTTTNCAATTAT
GTATAGTGCTGCATCAATGGNTGAATTATTTGATTNACCAAGAGTTGATCAATGGNCAAC
TAATGATAAAACTGTTTATCATACTATAATTTTTAATACTTTTGTATTTTGTCAATTCTT
TAATGAAATTAATNTGTAGAGTTTTAGATAATCAATTAAATGTTTTTAGAAATATTCATA
AAAGTTATGTATTTGNTGGTGTAGTTTCATTCTGTATATTCATTCAAGTTATTTTAGTTG
AATTTGGTGGTNAGTTTTTTGGAACTAGACATTTGGATTATAAACAATGGTTCTTTTGTA
TTATTATTGGGTTTGGTAGTTTAATTTGGGGATNTTGTCTTAGATTATTNCCACTTAAAG
ATAGAACCAATNCAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAATTNGAT
GNTGATATTGAGAGTCAACCATTATTGGGTGGANAATCAAATNGGAAAAAGGCTCGCTAA
TGTATTCACTCNAATCAATGTTATCTCTGCATTCCGTAATCAACCAAGATTAAAAAGAAC
AAAAAGTTCATTTGCAACANAATCATCAGATTCAAATGCTAGANATCATAGAAATTTAAA
GGTTCAGGTTA
sequence update 2002.10.25
Translated Amino Acid sequence
ISVYDVVVGDVVKLETGDTIPADGLYIAGQSIAVDESSMTGESDQKRKSNDRPFFLSGCQ
VLEGSASMLVIAVGPNSQWGKLKLLLQSPDSDTPLTQKLEKLAETIGKFGLIAAILTFGV
LLLKYVIVFVKDGHTWHWSELGTIVGFVVTAITIIVVAVPEGLPLAVTISLAYSMMKMMK
---

---FNRRPYGRFDSLITYRMWRNIIGQSIYQIAFLFXIMYSAASMXELFDXPRVDQWXTN
DKTVYHTIIFNTFVFCQFFNEINX*sfr*sikcf*kys*klcixwcsfilyihssyfs*i
wwxvfwn*tfgl*tmvllyyywvw*fnlgxls*iixt*r*nqxky*s*tigc*klgnxmx
ilrvnhywvxnqxgkrlanvftxinvisafrnqprlkrtkssfatxssdsnarxhrnlkv
qv


Translated Amino Acid sequence (All Frames)
Frame A:
ylcl*crsw*cc*irnw*ynsr*wslhcrskycsr*kfndw*irskkkik*ssflfirls
sfgrqckyvgncrwsklsmg*iktivtitrfrysinskigeis*nyw*iwfncchfnlwc
fiikicncickgwsylale*igyncwlccnsnynycrcst*rftigsnnlfgiqydende
---

---slivvhmvdlil**hivcgeillvnqfikllssxqlcivlhqwxnylixqelingql
miklfiil*flillyfvnslmklxcrvldnqlnvfrnihksyvfxgvvsfcifiqvilve
fggxffgtrhldykqwffciiigfgsliwgxclrlxplkdrtnxnievkpldvknlgixx
*y*estiigwxikxekgslmyslxsmlslhsvinqd*keqkvhlqxnhqiqmlxiiei*r
frl

Frame B:
ISVYDVVVGDVVKLETGDTIPADGLYIAGQSIAVDESSMTGESDQKRKSNDRPFFLSGCQ
VLEGSASMLVIAVGPNSQWGKLKLLLQSPDSDTPLTQKLEKLAETIGKFGLIAAILTFGV
LLLKYVIVFVKDGHTWHWSELGTIVGFVVTAITIIVVAVPEGLPLAVTISLAYSMMKMMK
---

---l*sssiw*i*ffnnisyvekyywsinlsncfplxnyv*ccing*ii*xtks*smxn*
**nclsyynf*yfcilsil**n*xvef*iin*mfleifikvmylxv*fhsvysfklf*ln
lvvsfleldiwiinngsfvlllglvv*fgdxvldyxhlkiepxqilklnhwmlktwexdx
diesqpllggxsnxkkar*cihsnqcylcip*stkikknkkficnxiirfkc*xs*kfkg
sg

Frame C:
slfmms*lvmlln*klviqfplmvftlpvkvlqsmkvq*lvnqikkenqmivlsfyqvvk
fwkavqvcw*lplvqtlngvn*nycynhqipilh*lknwrn*lkllvnlv*llpf*plvf
yy*nm*lyl*rmvilgigvnwvqllall*qqlqllslqylkvyhwq*qslwhtv**k**-
--

---FNRRPYGRFDSLITYRMWRNIIGQSIYQIAFLFXIMYSAASMXELFDXPRVDQWXTN
DKTVYHTIIFNTFVFCQFFNEINX*sfr*sikcf*kys*klcixwcsfilyihssyfs*i
wwxvfwn*tfgl*tmvllyyywvw*fnlgxls*iixt*r*nqxky*s*tigc*klgnxmx
ilrvnhywvxnqxgkrlanvftxinvisafrnqprlkrtkssfatxssdsnarxhrnlkv
qv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHG252 (SHG252Q) /CSM/SH/SHG2-C/SHG252Q.Seq.d/ 2359 0.0
CHO414 (CHO414Q) /CSM/CH/CHO4-A/CHO414Q.Seq.d/ 1241 0.0
CHQ205 (CHQ205Q) /CSM/CH/CHQ2-A/CHQ205Q.Seq.d/ 1237 0.0
CHA274 (CHA274Q) /CSM/CH/CHA2-D/CHA274Q.Seq.d/ 1201 0.0
AHA893 (AHA893Q) /CSM/AH/AHA8-D/AHA893Q.Seq.d/ 1072 0.0
AHF113 (AHF113Q) /CSM/AH/AHF1-A/AHF113Q.Seq.d/ 1061 0.0
CHI604 (CHI604Q) /CSM/CH/CHI6-A/CHI604Q.Seq.d/ 1057 0.0
AHG182 (AHG182Q) /CSM/AH/AHG1-D/AHG182Q.Seq.d/ 959 0.0
SHB639 (SHB639Q) /CSM/SH/SHB6-B/SHB639Q.Seq.d/ 906 0.0
VSH417 (VSH417Q) /CSM/VS/VSH4-A/VSH417Q.Seq.d/ 377 e-103

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH167306|BH167306.1 ENTRP17TF Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence. 70 1e-07 1
BH157305|BH157305.1 ENTRI93TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 70 1e-07 1
AZ541432|AZ541432.1 ENTDI72TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 70 1e-07 1
AZ529361|AZ529361.1 ENTBQ67TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 70 1e-07 1
CR932137|CR932137.1 Paramecium tetraurelia macronuclear, plasma membrane calcium ATPase, putative, complete gene. 64 8e-06 1
CR932134|CR932134.1 Paramecium tetraurelia macronuclear, plasma membrane calcium ATPase, putative, complete gene. 64 8e-06 1
BP188095|BP188095.1 Dugesia japonica cDNA, clone: 01329_HH, expressed in the head. 62 3e-05 1
U20321|U20321.1 Entamoeba histolytica putative plasma membrane calcium ion-transporting ATPase mRNA, partial cds. 44 6e-05 4
DY885767|DY885767.1 CeleSEQ1191 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ1191, mRNA sequence. 60 1e-04 1
AZ670856|AZ670856.1 ENTKI44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 44 0.003 3
dna update 2006. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q6ATV4) RecName: Full=Calcium-transporting ATPase 2, plasma mem... 135 3e-30
BT061216_1(BT061216|pid:none) Zea mays full-length cDNA clone ZM... 134 9e-30
AC146856_21(AC146856|pid:none) Medicago truncatula clone mth2-16... 133 1e-29
AF195029_1(AF195029|pid:none) Glycine max plasma membrane Ca2+-A... 132 2e-29
FB801420_1(FB801420|pid:none) Sequence 20693 from Patent WO20080... 132 2e-29
(O22218) RecName: Full=Calcium-transporting ATPase 4, plasma mem... 132 3e-29
FB868947_1(FB868947|pid:none) Sequence 88220 from Patent WO20080... 131 6e-29
D13984_1(D13984|pid:none) Arabidopsis thaliana ACA1 gene for chl... 131 6e-29
AC012375_23(AC012375|pid:none) Genomic sequence for Arabidopsis ... 131 6e-29
L08468_1(L08468|pid:none) Arabidopsis thaliana envelope Ca2+-ATP... 131 6e-29
protein update 2009. 4.18
PSORT

psg: 0.75 gvh: 0.37 alm: 0.17 top: 0.60 tms: 0.13 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: plasma membrane
16.0 %: nuclear
16.0 %: vacuolar
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for SHG252 is end

5' end seq. ID SHG252F
5' end seq.
>SHG252F.Seq
TATCTCTGTTTATGATGTCGTAGTTGGTGATGTTGTTAAATTAGAAACTGGTGATACAAT
TCCCGCTGATGGTCTTTACATTGCCGGTCAAAGTATTGCAGTCGATGAAAGTTCAATGAC
TGGTGAATCAGATCAAAAAAGAAAATCAAATGATCGTCCTTTCTTTTTATCAGGTTGTCA
AGTTTTGGAAGGCAGTGCAAGTATGTTGGTAATTGCCGTTGGTCCAAACTCTCAATGGGG
TAAATTAAAACTATTGTTACAATCACCAGATTCCGATACTCCATTAACTCAAAAATTGGA
GAAATTAGCTGAAACTATTGGTAAATTTGGTTTAATTGCTGCCATTTTAACCTTTGGTGT
TTTATTATTAAAATATGTAATTGTATTTGTAAAGGATGGTCATACTTGGCATTGGAGTGA
ATTGGGTACAATTGTTGGCTTTGTTGTAACAGCAATTACAATTATTGTCGTTGCAGTACC
TGAAGGTTTACCATTGGCAGTAACAATCTCTTTGGCATACAGTATGATGAAAATGATGAA
GNNNNNNNNNN
Length of 5' end seq. 551
3' end seq. ID SHG252Z
3' end seq.
>SHG252Z.Seq
NNNNNNNNNNTCTTTAATCGTCGTCCATATGGTAGATTTGATTCTTTAATAACATATCGT
ATGTGGAGAAATATTATTGGTCAATCAATTTATCAAATTGCTTTCCTCTTTNCAATTATG
TATAGTGCTGCATCAATGGNTGAATTATTTGATTNACCAAGAGTTGATCAATGGNCAACT
AATGATAAAACTGTTTATCATACTATAATTTTTAATACTTTTGTATTTTGTCAATTCTTT
AATGAAATTAATNTGTAGAGTTTTAGATAATCAATTAAATGTTTTTAGAAATATTCATAA
AAGTTATGTATTTGNTGGTGTAGTTTCATTCTGTATATTCATTCAAGTTATTTTAGTTGA
ATTTGGTGGTNAGTTTTTTGGAACTAGACATTTGGATTATAAACAATGGTTCTTTTGTAT
TATTATTGGGTTTGGTAGTTTAATTTGGGGATNTTGTCTTAGATTATTNCCACTTAAAGA
TAGAACCAATNCAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAATTNGATG
NTGATATTGAGAGTCAACCATTATTGGGTGGANAATCAAATNGGAAAAAGGCTCGCTAAT
GTATTCACTCNAATCAATGTTATCTCTGCATTCCGTAATCAACCAAGATTAAAAAGAACA
AAAAGTTCATTTGCAACANAATCATCAGATTCAAATGCTAGANATCATAGAAATTTAAAG
GTTCAGGTTA
Length of 3' end seq. 730
Connected seq. ID SHG252P
Connected seq.
>SHG252P.Seq
TATCTCTGTTTATGATGTCGTAGTTGGTGATGTTGTTAAATTAGAAACTGGTGATACAAT
TCCCGCTGATGGTCTTTACATTGCCGGTCAAAGTATTGCAGTCGATGAAAGTTCAATGAC
TGGTGAATCAGATCAAAAAAGAAAATCAAATGATCGTCCTTTCTTTTTATCAGGTTGTCA
AGTTTTGGAAGGCAGTGCAAGTATGTTGGTAATTGCCGTTGGTCCAAACTCTCAATGGGG
TAAATTAAAACTATTGTTACAATCACCAGATTCCGATACTCCATTAACTCAAAAATTGGA
GAAATTAGCTGAAACTATTGGTAAATTTGGTTTAATTGCTGCCATTTTAACCTTTGGTGT
TTTATTATTAAAATATGTAATTGTATTTGTAAAGGATGGTCATACTTGGCATTGGAGTGA
ATTGGGTACAATTGTTGGCTTTGTTGTAACAGCAATTACAATTATTGTCGTTGCAGTACC
TGAAGGTTTACCATTGGCAGTAACAATCTCTTTGGCATACAGTATGATGAAAATGATGAA
G----------TCTTTAATCGTCGTCCATATGGTAGATTTGATTCTTTAATAACATATCG
TATGTGGAGAAATATTATTGGTCAATCAATTTATCAAATTGCTTTCCTCTTTNCAATTAT
GTATAGTGCTGCATCAATGGNTGAATTATTTGATTNACCAAGAGTTGATCAATGGNCAAC
TAATGATAAAACTGTTTATCATACTATAATTTTTAATACTTTTGTATTTTGTCAATTCTT
TAATGAAATTAATNTGTAGAGTTTTAGATAATCAATTAAATGTTTTTAGAAATATTCATA
AAAGTTATGTATTTGNTGGTGTAGTTTCATTCTGTATATTCATTCAAGTTATTTTAGTTG
AATTTGGTGGTNAGTTTTTTGGAACTAGACATTTGGATTATAAACAATGGTTCTTTTGTA
TTATTATTGGGTTTGGTAGTTTAATTTGGGGATNTTGTCTTAGATTATTNCCACTTAAAG
ATAGAACCAATNCAAATATTGAAGTTAAACCATTGGATGTTAAAAACTTGGGAATTNGAT
GNTGATATTGAGAGTCAACCATTATTGGGTGGANAATCAAATNGGAAAAAGGCTCGCTAA
TGTATTCACTCNAATCAATGTTATCTCTGCATTCCGTAATCAACCAAGATTAAAAAGAAC
AAAAAGTTCATTTGCAACANAATCATCAGATTCAAATGCTAGANATCATAGAAATTTAAA
GGTTCAGGTTA
Length of connected seq. 1261
Full length Seq ID -
Full length Seq. -
Length of full length seq. -