SHG247
Library SH
(Link to library)
Clone ID SHG247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15908-1|Contig-U16061-1
Original site URL
Representative seq. ID SHG247P
(Link to Original site)
Representative DNA sequence
>SHG247 (SHG247Q) /CSM/SH/SHG2-B/SHG247Q.Seq.d/
AAAGTTAATAATTGTATTACTTTAATAAATAATCTATTCTTATTATTTTATTATTTTATT
AAAAAATGACAATATTTGATGCAGTTGCAAAAGCAATTGTTCCTTCAGTTACACATGCCA
TAGAAGAAAATAATAAAAATAGAGAAATACAAGAAAAAAGACAAAAAGAAACTAAAGATA
GAAATGATAGAATGGTTCAAAATCAAAAGGATAGAAAAGAAATGATTGGATTGACCAATG
AAAAACAAACTTATTCAAATTCAGTCAAAAATGCAAAAACTGACAATGAAAAAAAAATAT
TTCAAAATTTATTGGATAAAACAAATTCAAGAATAACTGATATTGAAAAAAGACAAAGTG
GTGATATCTCTGAATATAAAAGACTTGTTGAAGAAAATAAAAATTTGGAAAAAAATGTTA
AAGAATTCAAAGAAGTTATGAAACCCTTCGAGGAAAATGATATAATTCATAATCCTAAAC
ATGTTGATGAAGACACAATAGAAGAGAATAAAAAAAAAXXXXXXXXXXGGNGAAAACANT
CGAGNTTGGNGAAGGAAATTAAAACCCAAAATGGNGACCAAACCCAAGGACGGTGATGAA
AATANCCAAGATGGNGGTGAAAAACAATCAAGGATGGGGAATGAAAATAATAATCAAGAA
TGGTGATGGAAAATAATAATCCAAGATGGTGGTGAAAATAATCAAGGATGGTGGTGAAAA
CAATCCAAGGATGGTGATGAAAATAATAATCAAGATGGTGGTGAAAATAATCAAGATGGT
GAAAACAATCAAGATGGTGATGAAAATAATANCCAAGATGGTGAACAAAACCAAGACGGT
GATGAAAATAACCAAGAGGGTGATGAAAATAATAACCAAGGTGACGATGAAAATAATAAC
CAAGACGGTGATGAAAATAATAACCAAGATGGTGATGAAAATAACCAAGACGGTGATGAA
AATAACCAAGACGGTGATGAAAATAATCAAGGTAATGATGAAAATAACCAAGATGGTGAC
CAAAATAACCAAGGGGGTGATGAAAATAACCAAGATGGTGATGGTGAAAATAATCAAGGT
GATGAAAATAACCATTAATTTCTGGTGGTAATAATTCACTAAATAATAATGATTCACCAA
ACAGCGGTGGTGGTGGTAGTAATATGGTATTTTCACATTTAAATAATAGTCCATCAAAAA
GTGGTGGTGGTGGATCATCAAATAAATTTAATAGATTATTTACAGCGAAACCAATGGTAA
CATTTGAGCAATTTAATCAGTTAATTACAAAATTAAATTATGGTAAAGAAATACCAAAAC
AAAAGTTATTAATGCATTTACATGATTTACCAACTGATAAAGATGATTGTATTTGATGCT
TNATTTATTTTTATCAAGTTTT
sequence update 2002.10.25
Translated Amino Acid sequence
s**lyyfnk*siliillfy*KMTIFDAVAKAIVPSVTHAIEENNKNREIQEKRQKETKDR
NDRMVQNQKDRKEMIGLTNEKQTYSNSVKNAKTDNEKKIFQNLLDKTNSRITDIEKRQSG
DISEYKRLVEENKNLEKNVKEFKEVMKPFEENDIIHNPKHVDEDTIEENKKK---

---GENXRXWXRKLKPKMXTKPKDGDENXQDGGEKQSRMGNENNNQEW*wkiiiqdggen
nqgww*kqskdgdennnqdggennqdgennqdgdennxqdgeqnqdgdennqegdennnq
gddennnqdgdennnqdgdennqdgdennqdgdennqgndennqdgdqnnqggdennqdg
dgennqgdennh*flvviih*iimihqtavvvvviwyfhi*iivhqkvvvvdhqinlidy
lqrnqw*hlsnlis*lqn*imvkkyqnksy*ciymiyqlikmivfdaxfifikf


Translated Amino Acid sequence (All Frames)
Frame A:
kvnncitlinnlfllfyyfikk*qylmqlqkqlflqlhmp*kkiikiekykkkdkkklki
emiewfkikriekk*ld*pmknkliqiqskmqkltmkkkyfkiywikqiqe*lilkkdkv
vislnikdllkkikiwkkmlknskkl*npsrkmi*fiilnmlmktq*krikk---

---GENXRXWXRKLKPKMXTKPKDGDENXQDGGEKQSRMGNENNNQEW*wkiiiqdggen
nqgww*kqskdgdennnqdggennqdgennqdgdennxqdgeqnqdgdennqegdennnq
gddennnqdgdennnqdgdennqdgdennqdgdennqgndennqdgdqnnqggdennqdg
dgennqgdennh*flvviih*iimihqtavvvvviwyfhi*iivhqkvvvvdhqinlidy
lqrnqw*hlsnlis*lqn*imvkkyqnksy*ciymiyqlikmivfdaxfifikf

Frame B:
kliivll**iiysyyfiillkndni*cscksncsfsytchrrk**k*rntrkktkrn*r*
k**ngskskg*krndwidq*ktnlfkfsqkckn*q*kkniskfig*nkfknn*y*kktkw
*yl*i*ktc*rk*kfgkkc*riqrsyetlrgk*yns*s*tc**rhnrre*kk---

---xktxexgegn*npkwxpnprtvmkixkmxvknnqgwgmkiiikngdgk**skmvvki
ikdggennprmvmkiiikmvvkiikmvktikmvmkiixkmvnktktvmkitkrvmkiitk
vtmkiitktvmkiitkmvmkitktvmkitktvmkiikvmmkitkmvtkitkgvmkitkmv
mvkiikvmkitinfww**ftk***ftkqrwww**ygiftfk**sikkwwwwiik*i**ii
ysetngni*ai*svnykiklw*rntktkvinaft*ftn**r*lylmlxlflssf

Frame C:
s**lyyfnk*siliillfy*KMTIFDAVAKAIVPSVTHAIEENNKNREIQEKRQKETKDR
NDRMVQNQKDRKEMIGLTNEKQTYSNSVKNAKTDNEKKIFQNLLDKTNSRITDIEKRQSG
DISEYKRLVEENKNLEKNVKEFKEVMKPFEENDIIHNPKHVDEDTIEENKKK---

---xkxsxlxkeiktqngdqtqgr**kxprwx*ktikdge*k**srmvmennnprww*k*
srmvvktiqgw**k**srww*k*srw*kqsrw**k*xprw*tkprr**k*prg**k**pr
*r*k**prr**k**prw**k*prr**k*prr**k*sr***k*prw*pk*prg**k*prw*
w*k*sr**k*plisggnnslnnndspnsggggsnmvfshlnnspsksggggssnkfnrlf
takpmvtfeqfnqlitklnygkeipkqkllmhlhdlptdkddci*cxiyfyqv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHG247 (SHG247Q) /CSM/SH/SHG2-B/SHG247Q.Seq.d/ 1679 0.0
CHI520 (CHI520Q) /CSM/CH/CHI5-A/CHI520Q.Seq.d/ 757 0.0
CHC267 (CHC267Q) /CSM/CH/CHC2-C/CHC267Q.Seq.d/ 745 0.0
CFJ403 (CFJ403Q) /CSM/CF/CFJ4-A/CFJ403Q.Seq.d/ 720 0.0
SHA427 (SHA427Q) /CSM/SH/SHA4-B/SHA427Q.Seq.d/ 692 0.0
AHC767 (AHC767Q) /CSM/AH/AHC7-C/AHC767Q.Seq.d/ 563 e-159
CHK558 (CHK558Q) /CSM/CH/CHK5-C/CHK558Q.Seq.d/ 561 e-158
SLE877 (SLE877Q) /CSM/SL/SLE8-D/SLE877Q.Seq.d/ 531 e-150
SLC843 (SLC843Q) /CSM/SL/SLC8-B/SLC843Q.Seq.d/ 527 e-148
SHL229 (SHL229Q) /CSM/SH/SHL2-B/SHL229Q.Seq.d/ 480 e-134

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 561 e-161 2
AL035476|AL035476.7 Plasmodium falciparum MAL4P3. 52 2e-11 3
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 66 1e-07 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 2e-05 20
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5. 50 3e-05 2
AC178507|AC178507.1 Strongylocentrotus purpuratus clone R3-3033D20, WORKING DRAFT SEQUENCE, 17 unordered pieces. 30 4e-04 14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 42 0.001 14
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence. 34 0.002 15
BM276500|BM276500.1 PfESToaa84b09.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence. 54 0.002 2
AU086884|AU086884.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn3537. 34 0.002 3
dna update 2006. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC122571_1(BC122571|pid:none) Bos taurus ubiquitin specific pept... 45 0.005
B71609(B71609)hypothetical protein PFB0680w - malaria parasite (... 40 0.15
AE001362_140(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.15
AF337555_1(AF337555|pid:none) Candida albicans lysine/glutamic a... 40 0.19
FM992690_684(FM992690|pid:none) Candida dubliniensis CD36 chromo... 40 0.19
AE001362_130(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.25
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 40 0.25
AM270016_23(AM270016|pid:none) Aspergillus niger contig An02c021... 39 0.33
AE014188_184(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.33
AL034559_29(AL034559|pid:none) Plasmodium falciparum MAL3P7, com... 39 0.43
protein update 2009. 4.18
PSORT

psg: 0.84 gvh: 0.54 alm: 0.40 top: 0.43 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.19 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for SHG247 is nuc

5' end seq. ID SHG247F
5' end seq.
>SHG247F.Seq
AAAGTTAATAATTGTATTACTTTAATAAATAATCTATTCTTATTATTTTATTATTTTATT
AAAAAATGACAATATTTGATGCAGTTGCAAAAGCAATTGTTCCTTCAGTTACACATGCCA
TAGAAGAAAATAATAAAAATAGAGAAATACAAGAAAAAAGACAAAAAGAAACTAAAGATA
GAAATGATAGAATGGTTCAAAATCAAAAGGATAGAAAAGAAATGATTGGATTGACCAATG
AAAAACAAACTTATTCAAATTCAGTCAAAAATGCAAAAACTGACAATGAAAAAAAAATAT
TTCAAAATTTATTGGATAAAACAAATTCAAGAATAACTGATATTGAAAAAAGACAAAGTG
GTGATATCTCTGAATATAAAAGACTTGTTGAAGAAAATAAAAATTTGGAAAAAAATGTTA
AAGAATTCAAAGAAGTTATGAAACCCTTCGAGGAAAATGATATAATTCATAATCCTAAAC
ATGTTGATGAAGACACAATAGAAGAGAATAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 528
3' end seq. ID SHG247Z
3' end seq.
>SHG247Z.Seq
NNNNNNNNNNGGNGAAAACANTCGAGNTTGGNGAAGGAAATTAAAACCCAAAATGGNGAC
CAAACCCAAGGACGGTGATGAAAATANCCAAGATGGNGGTGAAAAACAATCAAGGATGGG
GAATGAAAATAATAATCAAGAATGGTGATGGAAAATAATAATCCAAGATGGTGGTGAAAA
TAATCAAGGATGGTGGTGAAAACAATCCAAGGATGGTGATGAAAATAATAATCAAGATGG
TGGTGAAAATAATCAAGATGGTGAAAACAATCAAGATGGTGATGAAAATAATANCCAAGA
TGGTGAACAAAACCAAGACGGTGATGAAAATAACCAAGAGGGTGATGAAAATAATAACCA
AGGTGACGATGAAAATAATAACCAAGACGGTGATGAAAATAATAACCAAGATGGTGATGA
AAATAACCAAGACGGTGATGAAAATAACCAAGACGGTGATGAAAATAATCAAGGTAATGA
TGAAAATAACCAAGATGGTGACCAAAATAACCAAGGGGGTGATGAAAATAACCAAGATGG
TGATGGTGAAAATAATCAAGGTGATGAAAATAACCATTAATTTCTGGTGGTAATAATTCA
CTAAATAATAATGATTCACCAAACAGCGGTGGTGGTGGTAGTAATATGGTATTTTCACAT
TTAAATAATAGTCCATCAAAAAGTGGTGGTGGTGGATCATCAAATAAATTTAATAGATTA
TTTACAGCGAAACCAATGGTAACATTTGAGCAATTTAATCAGTTAATTACAAAATTAAAT
TATGGTAAAGAAATACCAAAACAAAAGTTATTAATGCATTTACATGATTTACCAACTGAT
AAAGATGATTGTATTTGATGCTTNATTTATTTTTATCAAGTTTT
Length of 3' end seq. 884
Connected seq. ID SHG247P
Connected seq.
>SHG247P.Seq
AAAGTTAATAATTGTATTACTTTAATAAATAATCTATTCTTATTATTTTATTATTTTATT
AAAAAATGACAATATTTGATGCAGTTGCAAAAGCAATTGTTCCTTCAGTTACACATGCCA
TAGAAGAAAATAATAAAAATAGAGAAATACAAGAAAAAAGACAAAAAGAAACTAAAGATA
GAAATGATAGAATGGTTCAAAATCAAAAGGATAGAAAAGAAATGATTGGATTGACCAATG
AAAAACAAACTTATTCAAATTCAGTCAAAAATGCAAAAACTGACAATGAAAAAAAAATAT
TTCAAAATTTATTGGATAAAACAAATTCAAGAATAACTGATATTGAAAAAAGACAAAGTG
GTGATATCTCTGAATATAAAAGACTTGTTGAAGAAAATAAAAATTTGGAAAAAAATGTTA
AAGAATTCAAAGAAGTTATGAAACCCTTCGAGGAAAATGATATAATTCATAATCCTAAAC
ATGTTGATGAAGACACAATAGAAGAGAATAAAAAAAAA----------GGNGAAAACANT
CGAGNTTGGNGAAGGAAATTAAAACCCAAAATGGNGACCAAACCCAAGGACGGTGATGAA
AATANCCAAGATGGNGGTGAAAAACAATCAAGGATGGGGAATGAAAATAATAATCAAGAA
TGGTGATGGAAAATAATAATCCAAGATGGTGGTGAAAATAATCAAGGATGGTGGTGAAAA
CAATCCAAGGATGGTGATGAAAATAATAATCAAGATGGTGGTGAAAATAATCAAGATGGT
GAAAACAATCAAGATGGTGATGAAAATAATANCCAAGATGGTGAACAAAACCAAGACGGT
GATGAAAATAACCAAGAGGGTGATGAAAATAATAACCAAGGTGACGATGAAAATAATAAC
CAAGACGGTGATGAAAATAATAACCAAGATGGTGATGAAAATAACCAAGACGGTGATGAA
AATAACCAAGACGGTGATGAAAATAATCAAGGTAATGATGAAAATAACCAAGATGGTGAC
CAAAATAACCAAGGGGGTGATGAAAATAACCAAGATGGTGATGGTGAAAATAATCAAGGT
GATGAAAATAACCATTAATTTCTGGTGGTAATAATTCACTAAATAATAATGATTCACCAA
ACAGCGGTGGTGGTGGTAGTAATATGGTATTTTCACATTTAAATAATAGTCCATCAAAAA
GTGGTGGTGGTGGATCATCAAATAAATTTAATAGATTATTTACAGCGAAACCAATGGTAA
CATTTGAGCAATTTAATCAGTTAATTACAAAATTAAATTATGGTAAAGAAATACCAAAAC
AAAAGTTATTAATGCATTTACATGATTTACCAACTGATAAAGATGATTGTATTTGATGCT
TNATTTATTTTTATCAAGTTTT
Length of connected seq. 1392
Full length Seq ID -
Full length Seq. -
Length of full length seq. -