SHG212
Library SH
(Link to library)
Clone ID SHG212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHG212 (SHG212Q) /CSM/SH/SHG2-A/SHG212Q.Seq.d/
XXXXXXXXXXTGGGGNTGCNGTTGGNGNTGCTGNTGGNGGGGCNANTGCNCNTGGGGNTT
TTANTTTTGGTGGNAAAAAANGNTNNGNCTACTGGAAANCNANNCAAGGNGNTTCNAAGG
NCCCNTNAAAAGCC
sequence update 2002. 9.10
Translated Amino Acid sequence
---GXAVGXAXGGAXAXGXFXFGGKKXXXYWKXXQGXSKXPXKA


Translated Amino Acid sequence (All Frames)
Frame A:
---GXAVGXAXGGAXAXGXFXFGGKKXXXYWKXXQGXSKXPXKA


Frame B:
---gxxlxxlxxgxxxxgxlxlvxkxxxxtgxxxkxxxrxxxk


Frame C:
---gcxwxcxwxgxcxwgfxfwwxkxxxllexxxrxfxgpxks


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 134
length of database: 80,480,566
effective HSP length: 17
effective length of query: 117
effective length of database: 78,821,179
effective search space: 9222077943
effective search space used: 9222077943
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 56043776
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 134
length of database: 60,056,471,693
effective HSP length: 22
effective length of query: 112
effective length of database: 58,823,508,621
effective search space: 6588232965552
effective search space used: 6588232965552
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.









Dictyostelium discoideum cDNA Project Home



dna update 2006. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 33 3.9
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 33 3.9
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 32 8.6

protein update 2009. 1.16
PSORT

psg: 0.87 gvh: 0.52 alm: 0.49 top: 0.73 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
8.0 %: Golgi
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SHG212 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHG212Z
3' end seq.
>SHG212Z.Seq
NNNNNNNNNNTGGGGNTGCNGTTGGNGNTGCTGNTGGNGGGGCNANTGCNCNTGGGGNTT
TTANTTTTGGTGGNAAAAAANGNTNNGNCTACTGGAAANCNANNCAAGGNGNTTCNAAGG
NCCCNTNAAAAGCC
Length of 3' end seq. 134
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -